merge from upstream #6
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* Add profiles. * Fix cluster interface. Fixes #6
* Update to Snakemake 7.8.5 * Remove redudant "script" input for script rules. Fixes #7.
Update to most recent Snakemake 7.19.1. Fixes #13.
…ugh-envvar Simplify Snakemake calls by defining default profile within env
Fixes #16
Update Python to 3.11
Add conda-prefix to configuration
Update from pandoc-xnos to pandoc-crossref
`tags` aren't picked up by pandoc (anymore?). Fixes #24
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This is to detect dependency issues earlier than so far.
…issue Fix weasyprint compatibility issue
* add Slurm * remove LSF, as I cannot test it anymore Fixes #11
Add support for Slurm
Fixes #41. Optional notifications so far have been sent with `mail`. While very convenient, this relies on configuration outside the workflow that often is out-of-control of the user. Also, it relies on the executable being available. For these two reasons, Pushcut is now replacing `mail`. Pushcut requires minimal configuration outside the workflow that is within control of the user and only needs the `requests` Python lib. On the downside, Pushcut is proprietary and only available on iOS and iPadOS. I did not find an alternative that is free, easy to use, and better available.
Update optional notifications from email to Pushcut
Fixes #22
Add math support
Fixes #12
Add archive rule
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