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Improved handling of mods in .msp files #3213

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@bspratt bspratt commented Nov 6, 2024

Improved handling of mods defined in .msp using ")(" instead of "/" notation, and adding ability to consult UniMod for modifications not found in the default hardcoded list.

Also, issue a non-blocking message when a mod can't be recognized (formerly we failed silently)

Reported by user afshari1

…otation, and probably toward using a more general mod naming convention (currently a hardcoded list in the msp reader code, should probably use the same mechanism as rest of Skyline). Putting this up for Nick to look at.
… unknown peptide modifications.

In the event that a modification can't be understood, a message is written to the immediate window (formerly we failed silently, replacing the mod with an unmatchable string, and moved on)
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