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Cellprofiler app + plugin #1724

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merged 34 commits into from
Aug 30, 2024
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563393f
first version of cellprofiler plugin
binliunls Jul 23, 2024
386307c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 23, 2024
9657320
add vista support
binliunls Jul 30, 2024
02745d5
fix some issues
binliunls Aug 1, 2024
ab24f92
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 1, 2024
dcfe2b1
update the plugin part
binliunls Aug 2, 2024
a611b4f
Merge branch 'add-vsita2d-to-cellprofiler' of https://github.com/binl…
binliunls Aug 2, 2024
25a3f33
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 2, 2024
6d97251
fix format
binliunls Aug 6, 2024
a370cfa
Merge branch 'add-vsita2d-to-cellprofiler' of https://github.com/binl…
binliunls Aug 6, 2024
23e6d7e
fix plugin doc
binliunls Aug 7, 2024
5b438bd
remove redundant imports
binliunls Aug 9, 2024
5852e0a
add the test case
Aug 12, 2024
f37c05d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 12, 2024
71a13a9
add mock test
binliunls Aug 13, 2024
ca99c89
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 13, 2024
0a20ba1
add unit test
Aug 14, 2024
1f1045d
add readme for cellprofiler plugin
binliunls Aug 15, 2024
d7adf0d
add the cellprofiler image
binliunls Aug 15, 2024
c80c53d
update readme file
binliunls Aug 16, 2024
02bbc82
remove the unnecessary file
binliunls Aug 18, 2024
ed36f3a
fix import
binliunls Aug 19, 2024
ec832fd
add return
binliunls Aug 19, 2024
ad41a8d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 19, 2024
becf05c
update vista app readme
binliunls Aug 19, 2024
8b031d5
Merge branch 'add-vsita2d-to-cellprofiler' of https://github.com/binl…
binliunls Aug 19, 2024
4679ac7
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 19, 2024
6ac2f48
Merge branch 'main' into add-vsita2d-to-cellprofiler
binliunls Aug 19, 2024
79de3fe
rename the vista app to vista2d app
binliunls Aug 21, 2024
3bba98b
fix vista to vista2d
binliunls Aug 25, 2024
99e9e35
fix the bundle name from cell_vista_segmentation to vista2d
binliunls Aug 25, 2024
9975265
add vista2d model
binliunls Aug 25, 2024
57d027d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 25, 2024
71bbd07
fix readme issue
binliunls Aug 28, 2024
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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pre-commit-ci[bot] committed Aug 19, 2024

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jorisv Joris Vaillant
commit 4679ac7a2ae8bea1bce03a56975db89ba5e523f0
1 change: 0 additions & 1 deletion sample-apps/vista/README.md
Original file line number Diff line number Diff line change
@@ -66,4 +66,3 @@ Above command will download the latest bundles from Model-Zoo by default. If a s
```bash
monailabel start_server --app apps/vista --studies datasets --conf models cell_vista_segmentation_v0.2.0 --conf preload true --conf skip_trainers true
```