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23 Open 117 Closed
23 Open 117 Closed
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Issues list

Population-dependent rates
#142 opened Nov 10, 2022 by ekankaka
Simulating intracellular pathogen
#141 opened Nov 10, 2022 by ekankaka
outer plot stops before time zero if last event is not at zero
#136 opened Mar 18, 2022 by RouxCil
If user runs sim.outer.tree with only one compartment, twt should warn
#134 opened Feb 23, 2022 by ArtPoon
Refactor CompartmentType, etc
#133 opened Feb 14, 2022 by ArtPoon
Sampling a lineage multiple times
#131 opened Feb 8, 2022 by RouxCil
@ArtPoon @GopiGugan
14
Installing from local issues?
#130 opened Sep 8, 2021 by ewong347
invalid 'type' (list) of argument
#127 opened Oct 13, 2020 by ArtPoon
@ewong347
2
Instead of fixing bottleneck size for CompartmentType, draw from distribution
#126 opened Aug 4, 2020 by ArtPoon
5
Testing piecewise coalescent function
#125 opened May 1, 2020 by ArtPoon
1
Update YAML specification documentation (wiki)
#120 opened Feb 10, 2020 by ArtPoon
sim.inner.tree() modifies its input
#119 opened Jan 21, 2020 by davidchampredon
7
YAML Specification Difficult
#116 opened Jan 14, 2020 by wychao2
Change YAML specification for rates
#115 opened Jan 10, 2020 by ArtPoon
Check user settings for expected number of events enhancement
#114 opened Jan 9, 2020 by ArtPoon
Use data.table for EventLogger enhancement
#113 opened Jan 9, 2020 by ArtPoon
document load.outer.tree() for importation
#111 opened Jan 8, 2020 by davidchampredon
3
Need to implement clonal expansion
#106 opened Dec 16, 2019 by ArtPoon
2
sim.inner.tree() can only be called once on a Run object enhancement
#92 opened Nov 22, 2019 by ArtPoon
2
Implement time-heterogeneous rates for CompartmentTypes enhancement
#89 opened Nov 21, 2019 by ArtPoon
@RouxCil
4
Allow user to not specify bottleneck size for no bottleneck
#88 opened Nov 21, 2019 by ArtPoon
Run objects should record provenance of analysis, display on print()
#84 opened Nov 15, 2019 by ArtPoon
1
MODEL needs summary function
#62 opened Oct 10, 2019 by ArtPoon
1
ProTip! Adding no:label will show everything without a label.