rename folders

user-guide/01-getting-started/01-assembly_guides/01_pioreactor_20ml_v1.1/01-v11-introduction.md

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+---
+title: Before you begin assembly
+slug: /20ml-v11-hardware-setup-intro
+hide_table_of_contents: true
+---
+
+import AssemblyInstructionBlock from '@site/src/components/AssemblyInstructionBlock';
+import Highlight from '@site/src/components/Highlight';
+import Admonition from '@theme/Admonition';
+
+import * as colors from '@site/src/components/constants';
+
+
+<Admonition type="info" title="Info">
+  You can expect the assembly to take approximately 20-30 minutes.
+</Admonition>
+
+-------
+
+<AssemblyInstructionBlock title="Step 1: Necessary tools" images={["user-guide/hardware-assembly/rpi_types.jpg","user-guide/hardware-assembly/screwdriver.jpg"]}>
+
+You will need the following items to assemble your Pioreactor:
+
+1. Your own Raspberry Pi (RPi). Displayed are three examples.
+2. A Philip's head screwdriver.
+3. The Pioreactor 20ml v1.1 kit. 
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 2: Use all the information available to you" images={["user-guide/hardware-assembly/instructions.png", "user-guide/hardware-assembly/label_reference.jpg"]}>
+
+- Before starting a step, read all instructions and view all photos at the bottom of each step.
+- Most of the labels are scaled 1:1 and can be used to identify parts.
+
+:::info
+Missing a part? Email us at `[email protected]`, we're happy to help.
+:::
+
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 3: Electronics protection" images={["user-guide/hardware-assembly/nav_antistatic_polyzip_bags.png"]}>
+
+Here are some tips to prevent damage to the electronics:
+- **Keep the electronics inside the ESD bag** right until you are asked to install them.
+- **Always touch the sides of the board** while manipulating with it. Avoid touching the chips, capacitors, and other parts of the electronics.
+- **Before you touch the electronics**, use any conductive (steel) structure nearby to neutralize any electro-static energy.
+- **Be extra cautious in rooms with carpets**, which are a source of electrostatic energy.
+- Clothes made of wool and certain synthetic fabrics can easily gather static electricity. It is safer to wear **cotton clothing**.
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 4: We are here for you!" images={["user-guide/hardware-assembly/upgrade-version/finished-upgraded-version.png"]}>
+
+-  If you get stuck, missing a piece, or are unsure of something, **let us know**!
+-  You can reach out to us at `[email protected]`!
+-  Continue to the [next assembly instructions](/user-guide/rpi-hat-assembly).
+
+</AssemblyInstructionBlock>

user-guide/01-getting-started/01-assembly_guides/01_pioreactor_20ml_v1.1/02-v11-rpi-hat-assembly.md

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+---
+title: Assembling the Raspberry Pi and the HAT
+slug: /20ml-v11-rpi-hat-assembly
+hide_table_of_contents: true
+---
+
+import AssemblyInstructionBlock from '@site/src/components/AssemblyInstructionBlock';
+import Highlight from '@site/src/components/Highlight';
+import * as colors from '@site/src/components/constants';
+
+import Tabs from '@theme/Tabs';
+import TabItem from '@theme/TabItem';
+
+
+<AssemblyInstructionBlock title="Step 1: Necessary parts" images={["user-guide/hardware-assembly/upgrade-version/hat-pieces.png", "user-guide/hardware-assembly/gpio_check_A.jpg", "user-guide/hardware-assembly/gpio_check_B.jpg"]}>
+
+1. You will need:
+* A Raspberry Pi of your choosing. Displayed are three options - you just need one.
+* <Highlight color={colors.blue}>Hex nuts (4x)</Highlight>
+* <Highlight color={colors.red}>12mm hex standoffs (4x)</Highlight>
+* <Highlight color={colors.magenta}>12mm hex standoffs-with-6mm-screws (4x)</Highlight>
+* <Highlight color={colors.green}>10mm screws (4x)</Highlight>
+* <Highlight color={colors.orange}>Bottom faceplate</Highlight>
+* <Highlight color={colors.teal}>HAT PCB</Highlight>
+
+
+2. Check the GPIO pins on the <Highlight color={colors.teal}>HAT PCB</Highlight> to confirm that they are straight and not touching another GPIO pin.
+
+</AssemblyInstructionBlock>
+
+-----
+
+<Tabs>
+  <TabItem value="a_or_b" label="Raspberry Pi A or B instructions" default>
+
+
+<AssemblyInstructionBlock title="Step 2: Assemble the bottom faceplate" images={["user-guide/hardware-assembly/upgrade-version/bottom-faceplate.png","user-guide/hardware-assembly/upgrade-version/bottom-faceplate-screwed.png","user-guide/hardware-assembly/upgrade-version/rpi-no-standoffs.png"]}>
+
+
+1.  If using a half-size Raspberry Pi (aka a Zero model), switch to the tab above called "Raspberry Pi Zero" to see Zero specific instructions.
+
+:::tip
+The 40 GPIO pins (standing for general-purpose input/output) form a distinct row on one side of the Raspberry Pi. Note the orientation of these pins to help you assemble correctly!
+:::
+
+2.  Orientation: the base will have a flat edge and an edge with an indent. The GPIO pins sit along the <Highlight color={colors.blue}>indent</Highlight>, seen on the left in the images.
+3.  Insert the <Highlight color={colors.red}>10mm screws</Highlight> into the holes.
+4.  Hand screw a <Highlight color={colors.magenta}>hex nut</Highlight> onto each screw.
+5.  Place the Raspberry Pi on top, aligning the holes, with the <Highlight color={colors.green}>GPIO pins</Highlight> on the left. Note: your Raspberry Pi may look different than the one displayed.
+
+
+</AssemblyInstructionBlock>
+
+-----
+
+<AssemblyInstructionBlock title="Step 3: Placing the HAT PCB on top" images={["user-guide/hardware-assembly/upgrade-version/rpi-with-standoffs.png","user-guide/hardware-assembly/upgrade-version/gpio-unpushed.png","user-guide/hardware-assembly/upgrade-version/gpio-pushed.png", "user-guide/hardware-assembly/upgrade-version/standoff-on-hat.png"]}>
+
+1.  Hand screw on the <Highlight color={colors.blue}>12mm hex standoffs-with-6mm-screw</Highlight> in each corner.
+2.  Place the HAT PCB on top. <Highlight color={colors.red}>Push down *from the corners*</Highlight> to secure it in place. The HAT PCB's GPIO connector will line up with the RPi's GPIO pins and may require a slight force to compress down. You can also use the next Tip below to help apply force.
+
+3.  Hand screw the <Highlight color={colors.green}>12mm hex standoffs</Highlight> in each corner, on top of the HAT.
+
+:::tip
+By screwing down the standoffs, they'll help compress the HAT onto the RPi, too.
+:::
+
+4.  Put this aside and proceed to the next page.
+
+</AssemblyInstructionBlock>
+
+
+
+  </TabItem>
+  <TabItem value="zero" label="Raspberry Pi Zero / Zero 2 instructions">
+<AssemblyInstructionBlock title="Step 2: Assemble the bottom faceplate" images={["user-guide/hardware-assembly/upgrade-version/bottom-faceplate.png","user-guide/hardware-assembly/upgrade-version/hex-one-side.png","user-guide/hardware-assembly/upgrade-version/rpi-zero.png"]}>
+
+:::tip
+The 40 GPIO pins (standing for general-purpose input/output) form a distinct row on one side of the Raspberry Pi. Note the orientation of these pins to help you assemble correctly!
+:::
+
+1.  Orientation: the base will have a flat edge and an edge with an indent. The GPIO pins sit along the <Highlight color={colors.blue}>indent</Highlight>, seen on the left in the images.
+2.  Insert the 10mm screws into the <Highlight color={colors.red}>holes</Highlight>.
+3.  Hand screw the <Highlight color={colors.magenta}>hexnuts</Highlight> on the screws along the flat edge of the bottom faceplate. Hexnuts are only needed on one side because of the size of the Raspberry Pi Zero.
+4.  Place the Raspberry Pi along the indented edge of the faceplate, with the <Highlight color={colors.green}>GPIO pins</Highlight> on the left.
+5.  Hand screw on the <Highlight color={colors.blue}>12mm hex standoffs-with-6mm-screw</Highlight> in each corner.
+
+</AssemblyInstructionBlock>
+
+
+-----
+
+<AssemblyInstructionBlock title="Step 3: Placing the HAT PCB ontop" images={["user-guide/hardware-assembly/upgrade-version/gpio-unpushed.png","user-guide/hardware-assembly/upgrade-version/gpio-pushed.png", "user-guide/hardware-assembly/upgrade-version/standoff-on-hat.png"]}>
+
+1.  Place the HAT on top. <Highlight color={colors.red}>Push down</Highlight> to secure it in place. The HAT PCB's GPIO connector will line up with the RPi's GPIO pins, and may require a slight force to compress down. You can also use the next Tip below to help apply force.
+
+2.  Hand screw the <Highlight color={colors.green}>12mm hex standoffs</Highlight> in each corner, on top of the HAT.
+
+:::tip
+By screwing down the standoffs, you can use these standoffs to help compress the HAT onto the RPi, too.
+:::
+
+3.  Put this aside and proceed to the next page.
+
+</AssemblyInstructionBlock>
+
+  </TabItem>
+</Tabs>

user-guide/01-getting-started/01-assembly_guides/01_pioreactor_20ml_v1.1/03-v11-wetware-assembly.md

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+---
+title: Wetware assembly
+slug: /20ml-v11-wetware-assembly
+hide_table_of_contents: true
+---
+
+import AssemblyInstructionBlock from '@site/src/components/AssemblyInstructionBlock';
+import Highlight from '@site/src/components/Highlight';
+import * as colors from '@site/src/components/constants';
+
+import Tabs from '@theme/Tabs';
+import TabItem from '@theme/TabItem';
+
+<AssemblyInstructionBlock title="Step 1: Inserting the O-rings" images={["user-guide/hardware-assembly/upgrade-version/oring-to-vial-holder.png", "user-guide/hardware-assembly/upgrade-version/oring-groove.png", "user-guide/hardware-assembly/upgrade-version/thin-oring-into-top.png", "user-guide/hardware-assembly/upgrade-version/thick-oring-into-bottom.png",
+"user-guide/hardware-assembly/upgrade-version/vial-holders-with-orings.png"]}>
+
+:::note
+The vial holder of the v1.1 comes in two halves; a top vial holder and a bottom vial holder. Both have sections to insert O-rings for a more secure hold on your vials and increased protection against leaks. The <Highlight color={colors.magenta}>thinner O-ring (#024)</Highlight> fits into the top piece. The <Highlight color={colors.orange}>thicker O-ring (#121)</Highlight> lines the bottom piece. The O-rings are lubricated with a silicone-based lube. 
+:::
+
+1. The top vial holder has <Highlight color={colors.blue}>a groove within the body</Highlight> where the <Highlight color={colors.magenta}>thinner #024 O-ring</Highlight> sits. Carefully insert the O-ring using your fingers. Make sure to not twist the O-ring.
+2. Run your finger inside the vial holder, pushing the O-ring into place to ensure a snug fit. 
+3. The bottom vial holder has a groove for the <Highlight color={colors.orange}>thicker #121 O-ring</Highlight>. The O-ring will sit between the base of the holder and the heater PCB. Carefully insert the O-ring using your fingers. Make sure to not twist the O-ring.
+4. Push the O-ring into place to ensure a snug fit. 
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 2: Attach the window cover" images={["user-guide/hardware-assembly/upgrade-version/window-cover-parts.png", "user-guide/hardware-assembly/upgrade-version/window-screw.png"]}>
+
+1. Place the window cover over the window. It should fit snuggly.
+2. Attach it using <Highlight color={colors.red}>four 4mm screws</Highlight> (2 provided in the upgrade kit, and 2 previously used in the old v1.0). 
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 3: Connect the flex cable" images={["user-guide/hardware-assembly/upgrade-version/non-attached-heater-pcb.png","user-guide/hardware-assembly/upgrade-version/attached-heater-pcb.png"]}>
+
+
+1.	On the heater PCB, locate the white-&-beige cable connector, <Highlight color={colors.red}>pull the beige-colored tabs outward</Highlight> to open it.
+2.	<Highlight color={colors.green}>Insert the flex cable</Highlight> blue side down, copper side up, into the cable connector.
+3.  Then <Highlight color={colors.orange}>push the beige tabs back in</Highlight> to secure the flex cable.
+
+
+</AssemblyInstructionBlock>
+
+------
+
+<AssemblyInstructionBlock title="Step 4: Place and secure the heater PCB" images={["user-guide/hardware-assembly/upgrade-version/heater-cable-hole.png", "user-guide/hardware-assembly/upgrade-version/pull-heater-cable.png", "user-guide/hardware-assembly/upgrade-version/apply-pressure.png", "user-guide/hardware-assembly/upgrade-version/screw-in-flat-5mm.png", "user-guide/hardware-assembly/upgrade-version/replace-thermal-pad.png"]}>
+
+
+
+1. Insert the other end of the flex cable <Highlight color={colors.red}>below the O-ring and into the groove</Highlight>. Pull it through. 
+2. <Highlight color={colors.magenta}>Apply pressure</Highlight> on the back of the heater PCB so that it lies flat on the O-ring. Maintain this pressure for the next steps.
+3. Flip the holder and insert the <Highlight color={colors.green}>two flat M2.5-CS 5mm screws</Highlight> into the holes. 
+4. **While maintaining pressure**, take turns screwing each in until both are secure, and the heater pcb is securely attached to the bottom vial holder. 
+
+</AssemblyInstructionBlock>
+
+-----
+
+<AssemblyInstructionBlock title="Step 5: Placing the heating pad" images={["user-guide/hardware-assembly/upgrade-version/sticky-side.png","user-guide/hardware-assembly/upgrade-version/remove-blue.png","user-guide/hardware-assembly/upgrade-version/remove-blue-2.png"]}>
+
+1.	Remove the _clear_ plastic from one side of the thermal pad.
+2.	Place on the flat (aluminum) part of the heating PCB. Apply downwards pressure to secure it.
+3.	Remove the blue protective plastic on top of the thermal pad.
+
+
+</AssemblyInstructionBlock>
+
+-----
+
+<AssemblyInstructionBlock title="Step 6: Complete the vial holder" images={["user-guide/hardware-assembly/upgrade-version/twist-vial-holders-together.png"]}>
+
+1. Screw the top and bottom vial holder sections together.
+2. Set this aside and proceed to the next page. 
+
+</AssemblyInstructionBlock>

user-guide/01-getting-started/01-assembly_guides/01_pioreactor_20ml_v1.1/04-v11-faceplate-all-together.md

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+---
+title: Attaching the wetware to the HAT asssembly
+slug: /20ml-v11-putting-it-together
+hide_table_of_contents: true
+---
+
+import AssemblyInstructionBlock from '@site/src/components/AssemblyInstructionBlock';
+import Highlight from '@site/src/components/Highlight';
+import * as colors from '@site/src/components/constants';
+
+<AssemblyInstructionBlock title="Step 1: Necessary parts" images={["user-guide/hardware-assembly/stirring_parts.jpg"]}>
+
+*	<Highlight color={colors.blue}>Fan</Highlight>
+*	<Highlight color={colors.red}>Top faceplate</Highlight> (will have 4 x 30mm screws in it)
+*	<Highlight color={colors.orange}>One 5mm screw</Highlight>
+
+:::info
+The fan and top faceplate come assembled - leave them together. If they are not assembled, attach the fan onto the faceplate with the cable oriented toward the side labelled "PWM".
+:::
+
+</AssemblyInstructionBlock>
+
+
+-----
+
+<AssemblyInstructionBlock title="Step 2: Securing the vial holder" images={["user-guide/hardware-assembly/upgrade-version/fan-onto-top-faceplate.png", "user-guide/hardware-assembly/upgrade-version/completed-fan-assembly.png", "user-guide/hardware-assembly/upgrade-version/join-vial-holder-and-fan.png", "user-guide/hardware-assembly/upgrade-version/flat-flex-follows-arrow.png", "user-guide/hardware-assembly/upgrade-version/tighten-30mm-screws.png"]}>
+
+1. Push the <Highlight color={colors.red}>fan onto the top faceplate</Highlight>, orienting it such that the wire is pointing towards the button. 
+2. Place the vial holder on top of the <Highlight color={colors.green}>four ends of the 30mm screws</Highlight>. The screw ends should fit into four holes on the bottom of the vial holder. The flat flex cable should follow the <Highlight color={colors.orange}>arrow on the faceplate</Highlight>.
+3. Holding it together, finish screwing the <Highlight color={colors.blue}>silver screws</Highlight> on the bottom of the faceplate. The screws will enter square nuts in the vial holder. Do not overtighten.
+
+:::caution
+You should not feel resistance when tightening the screws into the square nuts. If you encounter resistance, unscrew and inspect the screw for any plastic debris. 
+:::
+
+4. The screw heads will be flush with the faceplate, and there should be no screw threads showing between the vial holder and the faceplate.
+
+
+</AssemblyInstructionBlock>
+
+-----
+
+<AssemblyInstructionBlock title="Step 3: Button extension" images={["user-guide/hardware-assembly/upgrade-version/apply-force-button-extension.png", "user-guide/hardware-assembly/upgrade-version/completed-button-extension.png"]}>
+
+The top faceplate now comes with a button extension to provide easier access when pushing the button. 
+
+1. Flip over the assembly.
+2. Insert the 10mm screw into the hole under the button extension.
+3. Place <Highlight color={colors.red}>one finger behind the extension</Highlight> and <Highlight color={colors.magenta}>apply torque with the other hand</Highlight> until the screw is secure in the hole. This may require a lot of force.
+
+</AssemblyInstructionBlock>
+
+-------
+
+<AssemblyInstructionBlock title="Step 4: Putting it all together" images={["user-guide/hardware-assembly/upgrade-version/attach-assembly-to-hat.png", "user-guide/hardware-assembly/upgrade-version/screw-assembly-to-hat.png",
+"user-guide/hardware-assembly/upgrade-version/fasten-heater-cable.png", "user-guide/hardware-assembly/upgrade-version/connect-pwm-one.png"]}>
+
+1. <Highlight color={colors.blue}>Place the vial holder assembly onto the Raspberry Pi/HAT</Highlight>. The GPIO pins align with the side notch of the faceplate.
+2. Using the <Highlight color={colors.red}>6mm screws</Highlight>, attach the top and bottom pieces in each corner.
+3. Check that the screw for the button extension is in the right position. 
+4. Open the <Highlight color={colors.orange}>flat flex cable connector</Highlight> on the HAT by pulling the tabs outward, like done previously. Insert the flex cable copper-side up.
+5. <Highlight color={colors.green}>Push the tabs inward</Highlight> to secure the flex cable.
+6. Insert the stirring power connector into <Highlight color={colors.magenta}>PWM channel 1</Highlight> (unlabelled).
+7. Continue to the next page. 
+
+
+</AssemblyInstructionBlock>