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🌿 Fern Regeneration -- September 23, 2025 #12

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🌿 Fern Regeneration -- September 23, 2025 #12

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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ name = "phenoml"

[tool.poetry]
name = "phenoml"
version = "0.0.2"
version = "v0.0.5"
description = ""
readme = "README.md"
authors = []
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73 changes: 14 additions & 59 deletions reference.md
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Expand Up @@ -100,15 +100,7 @@ client.agent.create(
<dl>
<dd>

**provider:** `typing.Optional[AgentProvider]` — FHIR provider type - can be a single provider or array of providers

</dd>
</dl>

<dl>
<dd>

**meta:** `typing.Optional[AgentFhirConfig]`
**provider:** `typing.Optional[AgentCreateRequestProvider]` — FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers

</dd>
</dl>
Expand Down Expand Up @@ -308,6 +300,9 @@ client = phenoml(
)
client.agent.update(
id="id",
name="name",
prompts=["prompt_123", "prompt_456"],
is_active=True,
)

```
Expand All @@ -332,39 +327,39 @@ client.agent.update(
<dl>
<dd>

**name:** `typing.Optional[str]` — Agent name
**name:** `str` — Agent name

</dd>
</dl>

<dl>
<dd>

**description:** `typing.Optional[str]` — Agent description
**prompts:** `typing.Sequence[str]` — Array of prompt IDs to use for this agent

</dd>
</dl>

<dl>
<dd>

**prompts:** `typing.Optional[typing.Sequence[str]]` — Array of prompt IDs to use for this agent
**is_active:** `bool` — Whether the agent is active

</dd>
</dl>

<dl>
<dd>

**tools:** `typing.Optional[typing.Sequence[str]]` — Array of MCP server tool IDs to use for this agent
**description:** `typing.Optional[str]` — Agent description

</dd>
</dl>

<dl>
<dd>

**is_active:** `typing.Optional[bool]` — Whether the agent is active
**tools:** `typing.Optional[typing.Sequence[str]]` — Array of MCP server tool IDs to use for this agent

</dd>
</dl>
Expand All @@ -380,15 +375,7 @@ client.agent.update(
<dl>
<dd>

**provider:** `typing.Optional[AgentProvider]` — FHIR provider type - can be a single provider or array of providers

</dd>
</dl>

<dl>
<dd>

**meta:** `typing.Optional[AgentFhirConfig]`
**provider:** `typing.Optional[AgentCreateRequestProvider]` — FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers

</dd>
</dl>
Expand Down Expand Up @@ -656,14 +643,6 @@ client.agent.chat(
<dl>
<dd>

**meta:** `typing.Optional[ChatFhirClientConfig]` — Optional user-specific FHIR configuration overrides

</dd>
</dl>

<dl>
<dd>

**request_options:** `typing.Optional[RequestOptions]` — Request-specific configuration.

</dd>
Expand Down Expand Up @@ -2216,15 +2195,7 @@ client.tools.create_fhir_resource(
<dl>
<dd>

**provider:** `typing.Optional[Lang2FhirAndCreateRequestProvider]` — FHIR provider to use for storing the resource

</dd>
</dl>

<dl>
<dd>

**meta:** `typing.Optional[FhirClientConfig]`
**provider:** `typing.Optional[str]` — FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum)

</dd>
</dl>
Expand Down Expand Up @@ -2326,15 +2297,7 @@ client.tools.search_fhir_resources(
<dl>
<dd>

**provider:** `typing.Optional[Lang2FhirAndSearchRequestProvider]` — FHIR provider to use for searching

</dd>
</dl>

<dl>
<dd>

**meta:** `typing.Optional[FhirClientConfig]`
**provider:** `typing.Optional[str]` — FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum)

</dd>
</dl>
Expand Down Expand Up @@ -2388,7 +2351,7 @@ client = phenoml(
)
client.tools.analyze_cohort(
text="female patients over 20 with diabetes but not hypertension",
provider="medplum",
provider="550e8400-e29b-41d4-a716-446655440000",
)

```
Expand All @@ -2413,15 +2376,7 @@ client.tools.analyze_cohort(
<dl>
<dd>

**provider:** `CohortRequestProvider` — FHIR provider to use for searching

</dd>
</dl>

<dl>
<dd>

**meta:** `typing.Optional[FhirClientConfig]`
**provider:** `str` — FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum)

</dd>
</dl>
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14 changes: 6 additions & 8 deletions src/phenoml/agent/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,23 +4,22 @@

from .types import (
AgentChatResponse,
AgentCreateRequest,
AgentCreateRequestProvider,
AgentDeleteResponse,
AgentFhirConfig,
AgentGetChatMessagesRequestOrder,
AgentGetChatMessagesResponse,
AgentListResponse,
AgentPromptsResponse,
AgentProvider,
AgentResponse,
AgentTemplate,
ChatFhirClientConfig,
AgentTemplateProvider,
ChatMessageTemplate,
ChatSessionTemplate,
JsonPatch,
JsonPatchOperation,
JsonPatchOperationOp,
PromptTemplate,
ProviderType,
SuccessResponse,
)
from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
Expand All @@ -29,17 +28,17 @@

__all__ = [
"AgentChatResponse",
"AgentCreateRequest",
"AgentCreateRequestProvider",
"AgentDeleteResponse",
"AgentFhirConfig",
"AgentGetChatMessagesRequestOrder",
"AgentGetChatMessagesResponse",
"AgentListResponse",
"AgentPromptsResponse",
"AgentProvider",
"AgentResponse",
"AgentTemplate",
"AgentTemplateProvider",
"BadRequestError",
"ChatFhirClientConfig",
"ChatMessageTemplate",
"ChatSessionTemplate",
"ForbiddenError",
Expand All @@ -51,7 +50,6 @@
"PromptTemplate",
"PromptsDeleteResponse",
"PromptsListResponse",
"ProviderType",
"SuccessResponse",
"UnauthorizedError",
"prompts",
Expand Down
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