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Fix wrong paths in notebooks and move graphs to lib
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@basicthinker
basicthinker committed Sep 6, 2017
1 parent 088d98d commit b6bcbbe
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Showing 26 changed files with 279 additions and 607 deletions.
0 graphs/__init__.py → lib/graphs/__init__.py
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0 graphs/call_commit_graph.py → lib/graphs/call_commit_graph.py
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0 graphs/call_graph/__init__.py → lib/graphs/call_graph/__init__.py
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0 graphs/call_graph/c.py → lib/graphs/call_graph/c.py
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0 graphs/call_graph/cpp.py → lib/graphs/call_graph/cpp.py
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0 graphs/call_graph/java.py → lib/graphs/call_graph/java.py
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0 graphs/call_graph/utils.py → lib/graphs/call_graph/utils.py
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0 graphs/commit_graph.py → lib/graphs/commit_graph.py
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0 graphs/cpp_tools.py → lib/graphs/cpp_tools.py
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0 graphs/detect_change.py → lib/graphs/detect_change.py
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0 graphs/devrank.py → lib/graphs/devrank.py
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0 graphs/git_tools.py → lib/graphs/git_tools.py
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0 graphs/pagerank.py → lib/graphs/pagerank.py
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0 graphs/parse_patch.py → lib/graphs/parse_patch.py
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0 graphs/patch_parser.py → lib/graphs/patch_parser.py
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0 graphs/processor.py → lib/graphs/processor.py
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0 graphs/ruby_tools.py → lib/graphs/ruby_tools.py
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0 graphs/srcml.py → lib/graphs/srcml.py
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0 graphs/write_graph_to_dot.py → lib/graphs/write_graph_to_dot.py
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192 changes: 137 additions & 55 deletions notebooks/apache_devrank.ipynb
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28 changes: 19 additions & 9 deletions notebooks/call_graph_cpp.ipynb
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Expand Up @@ -4,10 +4,14 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
"import sys\n",
"if '../lib' not in sys.path: sys.path.append('../lib')\n",
"\n",
"import numpy as np\n",
"from lxml import etree\n",
"from numpy import linalg as LA\n",
Expand Down Expand Up @@ -71,7 +75,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand Down Expand Up @@ -231,7 +236,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand Down Expand Up @@ -281,7 +287,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -292,7 +299,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -303,7 +311,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -314,7 +323,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": []
Expand All @@ -323,9 +333,9 @@
"metadata": {
"anaconda-cloud": {},
"kernelspec": {
"display_name": "Python [conda root]",
"display_name": "Python 3",
"language": "python",
"name": "conda-root-py"
"name": "python3"
},
"language_info": {
"codemirror_mode": {
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401 changes: 24 additions & 377 deletions notebooks/commit_graph_demo.ipynb
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34 changes: 23 additions & 11 deletions notebooks/linux_kernel.ipynb
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Expand Up @@ -4,10 +4,14 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
"import sys\n",
"if '../lib' not in sys.path: sys.path.append('../lib')\n",
"\n",
"import glob\n",
"import pdb\n",
"import cProfile\n",
Expand All @@ -24,7 +28,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -42,7 +47,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -56,7 +62,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -70,7 +77,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -83,7 +91,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand Down Expand Up @@ -136,7 +145,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -147,7 +157,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -158,7 +169,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": []
Expand All @@ -167,9 +179,9 @@
"metadata": {
"anaconda-cloud": {},
"kernelspec": {
"display_name": "Python [conda root]",
"display_name": "Python 3",
"language": "python",
"name": "conda-root-py"
"name": "python3"
},
"language_info": {
"codemirror_mode": {
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61 changes: 46 additions & 15 deletions notebooks/process_fs_patch.ipynb
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Expand Up @@ -2,7 +2,10 @@
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Read Data Files"
]
Expand All @@ -11,7 +14,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -23,7 +27,10 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
"fs_extractor = extractor.FSPatchExtractor()\n",
Expand All @@ -42,7 +49,10 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Supplement Data With Info from Linux Repo"
]
Expand All @@ -51,7 +61,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -69,10 +80,14 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
"import sys\n",
"if '../lib' not in sys.path: sys.path.append('../lib')\n",
"\n",
"from git import Commit\n",
"from graphs.patch_parser import PatchParser\n",
"\n",
Expand Down Expand Up @@ -107,7 +122,10 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Correct Misspelled Bug Consequence Type"
]
Expand All @@ -116,7 +134,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -131,7 +150,10 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Remove data points without message"
]
Expand All @@ -140,7 +162,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -153,7 +176,10 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Save Data for Future Convenience"
]
Expand All @@ -162,7 +188,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand All @@ -172,7 +199,10 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"deletable": true,
"editable": true
},
"source": [
"## Output Patch Data to XML Files"
]
Expand All @@ -181,7 +211,8 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
"deletable": true,
"editable": true
},
"outputs": [],
"source": [
Expand Down Expand Up @@ -217,7 +248,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.4.3"
"version": "3.5.2"
}
},
"nbformat": 4,
Expand Down
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