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PennLINC · Dec 4, 2024 · fdccae2 · fdccae2
1 parent 257f2d1
commit fdccae2
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Showing 2 changed files with 8 additions and 5 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -20,11 +20,11 @@ classifiers = [
 dependencies = [
   "neuromaps",
   "nipype >= 1.8.5",
-  "nireports @ git+https://github.com/pennlinc/nireports.git@main",
+  "nireports",
   "nitransforms == 24.1.0",
-  "niworkflows @ git+https://github.com/pennlinc/niworkflows.git@master",
+  "niworkflows",
   "pybids >= 0.15.6",
-  "smriprep @ git+https://github.com/pennlinc/smriprep.git@master",
+  "smriprep",
   "typer",
 ]
 dynamic = ["version"]

diff --git a/src/smripost_linc/workflows/base.py b/src/smripost_linc/workflows/base.py
@@ -407,9 +407,12 @@ def init_single_run_wf(anat_file, atlases):
 
     # Fill-in datasinks seen so far
     for node in workflow.list_node_names():
-        if node.split('.')[-1].startswith('ds_'):
+        node_name = node.split('.')[-1]
+        if node_name.startswith('ds_'):
             workflow.get_node(node).inputs.base_directory = config.execution.output_dir
-            workflow.get_node(node).inputs.source_file = anat_file
+
+            if not node_name.startswith('ds_atlas_'):
+                workflow.get_node(node).inputs.source_file = anat_file
 
     return workflow