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Release v0.250306 #697

Merged
merged 1 commit into from
Mar 6, 2025
Merged

Release v0.250306 #697

merged 1 commit into from
Mar 6, 2025

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fzimmermann89
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@fzimmermann89 fzimmermann89 commented Mar 6, 2025 •
edited by lrlunin
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@fzimmermann89 fzimmermann89 requested a review from lrlunin March 6, 2025 00:23
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Coverage

Coverage Report
FileStmtsMissCoverMissing
src/mrpro
   _version.py6267%7–8
src/mrpro/algorithms/csm
   inati.py24196%44
   walsh.py16194%53
src/mrpro/algorithms/dcf
   dcf_voronoi.py55493%15, 55–56, 89
src/mrpro/algorithms/optimizers
   adam.py20195%101
   pdhg.py79396%177–178, 184
   pgd.py51492%106, 151–154
src/mrpro/algorithms/reconstruction
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   IterativeSENSEReconstruction.py13192%79
   Reconstruction.py502256%42, 54–56, 80–87, 108–117
   RegularizedIterativeSENSEReconstruction.py411759%97–101, 115–140
src/mrpro/data
   AcqInfo.py145597%42, 121–122, 124, 233
   CsmData.py29390%15, 84–86
   DcfData.py45882%18, 66, 78–83
   EncodingLimits.py73396%33, 123, 126
   IData.py59886%118, 132, 159–167
   IHeader.py1361291%69–72, 253, 257, 261, 265, 299–303
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   KNoise.py311552%39–52, 56–61
   KTrajectory.py108397%166, 168, 188
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   acq_filters.py12192%47
src/mrpro/data/traj_calculators
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src/mrpro/operators
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   FiniteDifferenceOp.py27293%40, 105
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   LinearOperator.py201996%48, 107, 217, 244, 251, 292, 301, 309, 326
   LinearOperatorMatrix.py1621988%82, 119, 152, 161, 166, 175–178, 191–194, 202–203, 208–209, 221, 310, 337, 364
   MultiIdentityOp.py13285%43, 48
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   Operator.py79297%32, 88
   ProximableFunctionalSeparableSum.py39392%50, 103, 110
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   WaveletOp.py119596%151, 169, 204, 209, 232
   ZeroPadOp.py16194%30
src/mrpro/phantoms
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src/mrpro/utils
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   sliding_window.py34197%34
   split_idx.py10280%43, 47
   summarize_tensorvalues.py12375%23, 25, 27
   typing.py695520%9–235
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   zero_pad_or_crop.py31681%26, 30, 55, 58, 61, 64
TOTAL569546992% 

Tests Skipped Failures Errors Time
2463 0 💤 0 ❌ 0 🔥 1m 52s ⏱️

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lrlunin approved these changes Mar 6, 2025
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🚀🚀🚀

@fzimmermann89 fzimmermann89 merged commit 6d4b221 into main Mar 6, 2025
26 checks passed
@fzimmermann89 fzimmermann89 deleted the 0.250306 branch March 6, 2025 09:50
fzimmermann89 added a commit that referenced this pull request Mar 14, 2025
@fzimmermann89
Squashed commit of the following:
64af75a 
commit 7a6ad39
Author: Felix Zimmermann <[email protected]>
Date:   Fri Mar 14 01:40:07 2025 +0100

    py310

commit cf58e03
Author: Felix Zimmermann <[email protected]>
Date:   Fri Mar 14 01:34:30 2025 +0100

    py310

commit 9caa056
Author: Felix Zimmermann <[email protected]>
Date:   Fri Mar 14 01:31:23 2025 +0100

    default

commit 85b0fd9
Author: Felix Zimmermann <[email protected]>
Date:   Fri Mar 14 01:28:53 2025 +0100

    fix

commit 6785ccf
Author: Felix Zimmermann <[email protected]>
Date:   Fri Mar 14 01:10:50 2025 +0100

    add avg op

commit 704fecd
Author: Stefan Martin <[email protected]>
Date:   Tue Mar 11 11:31:43 2025 +0100

    Fix examples in readme (#713)

commit 77290ef
Author: bernharb <[email protected]>
Date:   Mon Mar 10 12:13:56 2025 +0100

    Fix naming of RearrangeOp tests (#711)

commit 2e6e0d0
Author: bernharb <[email protected]>
Date:   Mon Mar 10 11:19:56 2025 +0100

    Add tolerance to rotation mean test (#710)

commit d87ab35
Author: Leonid Lunin <[email protected]>
Date:   Fri Mar 7 15:03:53 2025 +0100

    Add python 3.13 support (#704)

commit d286092
Author: Felix F Zimmermann <[email protected]>
Date:   Fri Mar 7 14:27:29 2025 +0100

    Fix batched complex grid sampling (#695)

commit d52987d
Author: Christoph Kolbitsch <[email protected]>
Date:   Fri Mar 7 14:22:08 2025 +0100

    Update readme on fork and pull request (#653)

commit 133a11e
Author: Stefan Martin <[email protected]>
Date:   Fri Mar 7 11:06:05 2025 +0100

    Change iteration argument name in optimizers (#687)

    Co-authored-by: Felix F Zimmermann <[email protected]>

commit 2988477
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Mar 6 20:26:00 2025 +0100

    Add Jacobian of Operator (#452)

commit 6a9eb16
Author: rkcatarina <[email protected]>
Date:   Thu Mar 6 20:09:11 2025 +0100

    Update zenodo citation (#698)

commit 3aa5aeb
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Mar 6 20:04:43 2025 +0100

    Reduce RAM usage in tests (#703)

commit 870967c
Author: Mara Guastini <[email protected]>
Date:   Thu Mar 6 16:32:33 2025 +0100

    Add stopping criterion to optimizer callback (#699)

commit 10aa16c
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Mar 6 16:17:03 2025 +0100

    Indexing helper (#672)

commit 15060bf
Author: Christoph Kolbitsch <[email protected]>
Date:   Thu Mar 6 10:56:11 2025 +0100

    Add gradient and autodiff checks for linear operators (#536)

    Co-authored-by: Felix F Zimmermann <[email protected]>

commit 6d4b221
Author: Felix F Zimmermann <[email protected]>
Date:   Thu Mar 6 10:50:30 2025 +0100

    Release v0.250306 (#697)

commit ad7b6e0
Author: rkcatarina <[email protected]>
Date:   Thu Mar 6 01:12:25 2025 +0100

    Rename ti to saturation_time in saturation recovery model (#689)

commit 3839a07
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 20:23:51 2025 +0100

    Refactor signal model tests (#671)

commit d4bd171
Author: Stefan Martin <[email protected]>
Date:   Wed Mar 5 20:18:48 2025 +0100

    Add __repr__ to Fourier operators (#676)

    Co-authored-by: Felix F Zimmermann <[email protected]>

commit 08a60e9
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 20:13:45 2025 +0100

    Make Trajectory and Idx 5D (#660)

    Makes all of our dataclasses at least 5D.
    So acq_idx get a (singleton) k0 dimension, trajectory a singleton coil dimension etc.

commit a7a5e2f
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 17:34:49 2025 +0100

    Use gram in operator_norm (#682)

commit c301e1b
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 17:29:40 2025 +0100

    Add more information to IHeader (#591)

commit 65b965c
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 17:23:11 2025 +0100

    Rename remove_repeat to reduce_repeat and add tests (#679)

commit 8e79e74
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 17:17:24 2025 +0100

    Refactor AcqInfo and Trajectory Calculation (#560)

commit 14e4058
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 15:32:04 2025 +0100

    Fix torchvision in docker images (#693)

commit 2bd6e29
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 15:19:38 2025 +0100

    Add unsqeeze_at (#656)

commit 274e203
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 15:03:29 2025 +0100

    Make Rotation einops compatible (#655)

commit b9840b8
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Mar 5 14:32:33 2025 +0100

    Add Brainweb phantom (#630)

commit 7fe0014
Author: Mara Guastini <[email protected]>
Date:   Wed Mar 5 13:52:06 2025 +0100

    Add pgd (fista) algorithm (#293)

    Co-authored-by: Felix F Zimmermann <[email protected]>
    Co-authored-by: Christoph Kolbitsch <[email protected]>
    Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
    Co-authored-by: koflera <[email protected]>

commit c80ad02
Author: Andreas Kofler <[email protected]>
Date:   Wed Mar 5 13:20:57 2025 +0100

    Bump pydicom dependency (#685)

commit a14fde8
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Wed Mar 5 10:56:54 2025 +0100

    [pre-commit] pre-commit autoupdate (#681)
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