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Add support for experiments (previously named timecourses) #263

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Add support for experiments (previously named timecourses) #263

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Commits on May 20, 2024

  1. add timecourse.py:* to __init__

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    dilpath committed May 20, 2024
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  2. add timecourse_df to petab.Problem

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    dilpath committed May 20, 2024
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  3. add timecourse_files to yaml.py

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    dilpath committed May 20, 2024
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  4. add timecourse constants to C.py

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    dilpath committed May 20, 2024
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Commits on May 24, 2024

  1. add timecourses.py

    @dilpath
    dilpath committed May 24, 2024
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  2. save timecourses in PEtab yaml; test to_files_generic; add timecour… 

    …ses to problem tests
    @dilpath
    dilpath committed May 24, 2024
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  3. add test_timecourses.py

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    dilpath committed May 24, 2024
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Commits on May 29, 2024

  1. update measurements for timecourses; add `core.time_is_at_steady_stat… 

    …e`; add dependency
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    dilpath committed May 29, 2024
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  2. parameter_mapping.py: update and refactor for timecourses

    @dilpath
    dilpath committed May 29, 2024
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  3. add Timecourse and Period classes

    @dilpath
    dilpath committed May 29, 2024
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  4. add Timecourse.to_series

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    dilpath committed May 29, 2024
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  5. test denesting of nesting from restartEvery and nested timecourses

    @dilpath
    dilpath committed May 29, 2024
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Commits on Jun 2, 2024

  1. rename to experiments

    @dilpath
    dilpath committed Jun 2, 2024
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  2. update measurements

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    dilpath committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. update test_parameter_mapping to new par_map structure

    @dilpath
    dilpath committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. update sbml get_period_model and fix tests

    @dilpath
    dilpath committed Jun 4, 2024
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  2. update simplify and lint for experiments

    @dilpath
    dilpath committed Jun 4, 2024
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  3. fix remaining nonvis tests

    @dilpath
    dilpath committed Jun 4, 2024
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  4. fix vis example petabs

    @dilpath
    dilpath committed Jun 4, 2024
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  5. Merge branch 'develop' into tc

    @dilpath
    dilpath committed Jun 4, 2024
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Commits on Jul 1, 2024

  1. merge develop

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    dilpath committed Jul 1, 2024
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