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fix #525
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FFroehlich authored and dweindl committed Jul 3, 2024
1 parent 407bdbe commit 1eade37
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6 changes: 3 additions & 3 deletions doc/documentation_data_format.rst
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Expand Up @@ -212,7 +212,7 @@ Detailed field description

- ``observableId`` [STRING, NOT NULL, REFERENCES(observables.observableID)]

Observable ID as defined in the observables table described below.
Observable ID as defined in the observable table described below.

- ``preequilibrationConditionId`` [STRING OR NULL, REFERENCES(conditionsTable.conditionID), OPTIONAL]

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``datasetId``, which is helpful for plotting e.g. error bars.


Observables table
-----------------
Observable table
----------------

Parameter estimation requires linking experimental observations to the model
of interest. Therefore, one needs to define observables (model outputs) and
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10 changes: 5 additions & 5 deletions doc/tutorial.rst
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Expand Up @@ -130,7 +130,7 @@ functions. Additionally, a noise model can be introduced to account for
the measurement errors. In PEtab, this can be encoded in the observable
file:

.. list-table:: Observables table ``observables.tsv``.
.. list-table:: Observable table ``observables.tsv``.
:header-rows: 1

* - observableId
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- Rel. STAT5A abundance [%]
- ...

.. list-table:: Observables table ``observables.tsv`` (continued).
.. list-table:: Observable table ``observables.tsv`` (continued).
:header-rows: 1

* - ...
Expand All @@ -162,7 +162,7 @@ file:
- 100*(STAT5A + pApB + 2*pApA) / (2 \* pApB + 2\* pApA + STAT5A + STAT5B + 2*pBpB)
- ...

.. list-table:: Observables table ``observables.tsv`` (continued).
.. list-table:: Observable table ``observables.tsv`` (continued).
:header-rows: 1

* - ...
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brevity, only the first and last time point of the example are shown
here (the omitted measurements are indicated by “...” in the example).

* *noiseParameters* relates to the *noiseParameters* in the observables
file. In our example, the measurement noise is unknown. Therefore we
* *noiseParameters* relates to the *noiseParameters* in the observable table.
In our example, the measurement noise is unknown. Therefore we
define parameters here which have to be estimated (see parameters sheet
below). If the noise is known, e.g. from multiple replicates, numeric
values can be used in this column.
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