Fix Protocol Titles in Readme files

protoBuilds/090c2e/README.json

@@ -1,25 +1,26 @@
 {
     "author": "Opentrons",
     "categories": {
-        "Nucleic Acid Purification": [],
-        "Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit": []
+        "Nucleic Acid Purification": [
+            "Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit"
+        ]
     },
     "deck-setup": "",
     "description": "This protocol performs a nucleic acid purification according to the Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit.",
     "internal": "090c2e",
     "labware": "\nQIAGEN 96 Tube Rack 1.2mL #19560\nNEST 12 Well Reservoir 15 mL #360102\nNEST 1 Well Reservoir 195 mL #360103\nOpentrons 96 Filter Tip Rack 200 \u00b5L\nNEST 96 Well Plate 100 \u00b5L PCR Full Skirt #402501\n",
     "markdown": {
-        "author": "\n[Opentrons](https://opentrons.com/)\n\n",
-        "categories": "\n- Nucleic Acid Purification\n  - Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit\n\n",
-        "deck-setup": "\n![deck](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/deckv2.png)\n\n",
-        "description": "\nThis protocol performs a nucleic acid purification according to the [Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit](https://s3.amazonaws.com/pf-user-files-01/u-4256/uploads/2023-03-14/is13ts3/QMF27.0248.M5645%20v9.0%202.pdf).\n\n",
-        "internal": "\n090c2e\n",
-        "labware": "\n- QIAGEN 96 Tube Rack 1.2mL #19560\n- [NEST 12 Well Reservoir 15 mL #360102](http://www.cell-nest.com/page94?_l=en&product_id=102)\n- [NEST 1 Well Reservoir 195 mL #360103](http://www.cell-nest.com/page94?_l=en&product_id=102)\n- Opentrons 96 Filter Tip Rack 200 \u00b5L\n- [NEST 96 Well Plate 100 \u00b5L PCR Full Skirt #402501](http://www.cell-nest.com/page94?_l=en&product_id=97&product_category=96)\n\n",
-        "modules": "\n- [Opentrons Magnetic Module (GEN2)](https://shop.opentrons.com/magnetic-module-gen2/)\n\n",
-        "notes": "\nIf you have any questions about this protocol, please contact the Protocol Development Team by filling out the [Troubleshooting Survey](https://protocol-troubleshooting.paperform.co/).\n\n",
-        "pipettes": "\n- [Opentrons P300 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)\n\n",
-        "process": "\n1. Input your protocol parameters above.\n2. Download your protocol and unzip if needed.\n3. Upload your custom labware to the [OT App](https://opentrons.com/ot-app) by navigating to `More` > `Custom Labware` > `Add Labware`, and selecting your labware files (.json extensions) if needed.\n4. Upload your protocol file (.py extension) to the [OT App](https://opentrons.com/ot-app) in the `Protocol` tab.\n5. Set up your deck according to the deck map.\n6. Calibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our [support articles](https://support.opentrons.com/en/collections/1559720-guide-for-getting-started-with-the-ot-2).\n7. Hit \"Run\".\n\n",
-        "reagent-setup": "\n![reagents](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/reagentsv2.png)\n\n",
+        "author": "[Opentrons](https://opentrons.com/)\n\n\n",
+        "categories": "* Nucleic Acid Purification\n\t* Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit\n\n\n",
+        "deck-setup": "![deck](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/deck.png)\n\n\n",
+        "description": "This protocol performs a nucleic acid purification according to the [Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit](https://s3.amazonaws.com/pf-user-files-01/u-4256/uploads/2023-03-14/is13ts3/QMF27.0248.M5645%20v9.0%202.pdf).\n\n\n",
+        "internal": "090c2e\n",
+        "labware": "* QIAGEN 96 Tube Rack 1.2mL #19560\n* [NEST 12 Well Reservoir 15 mL #360102](http://www.cell-nest.com/page94?_l=en&product_id=102)\n* [NEST 1 Well Reservoir 195 mL #360103](http://www.cell-nest.com/page94?_l=en&product_id=102)\n* Opentrons 96 Filter Tip Rack 200 \u00b5L\n* [NEST 96 Well Plate 100 \u00b5L PCR Full Skirt #402501](http://www.cell-nest.com/page94?_l=en&product_id=97&product_category=96)\n\n\n",
+        "modules": "* [Opentrons Magnetic Module (GEN2)](https://shop.opentrons.com/magnetic-module-gen2/)\n\n\n",
+        "notes": "If you have any questions about this protocol, please contact the Protocol Development Team by filling out the [Troubleshooting Survey](https://protocol-troubleshooting.paperform.co/).\n\n\n",
+        "pipettes": "* [Opentrons P300 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)\n\n\n",
+        "process": "1. Input your protocol parameters above.\n2. Download your protocol and unzip if needed.\n3. Upload your custom labware to the [OT App](https://opentrons.com/ot-app) by navigating to `More` > `Custom Labware` > `Add Labware`, and selecting your labware files (.json extensions) if needed.\n4. Upload your protocol file (.py extension) to the [OT App](https://opentrons.com/ot-app) in the `Protocol` tab.\n5. Set up your deck according to the deck map.\n6. Calibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our [support articles](https://support.opentrons.com/en/collections/1559720-guide-for-getting-started-with-the-ot-2).\n7. Hit \"Run\".\n\n\n",
+        "reagent-setup": "![reagents](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/reagents.png)\n\n\n",
         "title": "Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit"
     },
     "modules": [

protoBuilds/0dda91/README.json

@@ -21,7 +21,7 @@
         "pipettes": "* [P20 GEN2 Single Channel Pipette](https://shop.opentrons.com/single-channel-electronic-pipette-p20/)\n\n---\n\n",
         "process": "1. Input your protocol parameters above.\n2. Download your protocol and unzip if needed.\n3. Upload your custom labware to the [OT App](https://opentrons.com/ot-app) by navigating to `More` > `Custom Labware` > `Add Labware`, and selecting your labware files (.json extensions) if needed.\n4. Upload your protocol file (.py extension) to the [OT App](https://opentrons.com/ot-app) in the `Protocol` tab.\n5. Set up your deck according to the deck map.\n6. Calibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our [support articles](https://support.opentrons.com/en/collections/1559720-guide-for-getting-started-with-the-ot-2).\n7. Hit 'Run'.\n\n",
         "protocol-steps": "1. Transfer 2-35 uL from the 96 well PCR plate to a 2 mL snap tube\n2. Repeat across the entire plate according to the .csv file\n\n",
-        "title": "Protocol Title (should match metadata of .py file)"
+        "title": "16S Library pooling"
     },
     "modules": [
         "Magnetic Module (GEN2) - Not used in protocol but loaded so module can remain on the deck"
@@ -30,5 +30,5 @@
     "pipettes": "\nP20 GEN2 Single Channel Pipette\n\n",
     "process": "\nInput your protocol parameters above.\nDownload your protocol and unzip if needed.\nUpload your custom labware to the OT App by navigating to More > Custom Labware > Add Labware, and selecting your labware files (.json extensions) if needed.\nUpload your protocol file (.py extension) to the OT App in the Protocol tab.\nSet up your deck according to the deck map.\nCalibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our support articles.\nHit 'Run'.\n",
     "protocol-steps": "\nTransfer 2-35 uL from the 96 well PCR plate to a 2 mL snap tube\nRepeat across the entire plate according to the .csv file\n",
-    "title": "Protocol Title (should match metadata of .py file)"
+    "title": "16S Library pooling"
 }

protoBuilds/0fdc01/README.json

@@ -19,7 +19,7 @@
         "pipettes": "* [P300, 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)\n* [P20, 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)\n\n",
         "process": "1. Input your protocol parameters above.\n2. Download your protocol and unzip if needed.\n3. Upload your custom labware to the [OT App](https://opentrons.com/ot-app) by navigating to `More` > `Custom Labware` > `Add Labware`, and selecting your labware files (.json extensions) if needed.\n4. Upload your protocol file (.py extension) to the [OT App](https://opentrons.com/ot-app) in the `Protocol` tab.\n5. Set up your deck according to the deck map.\n6. Calibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our [support articles](https://support.opentrons.com/en/collections/1559720-guide-for-getting-started-with-the-ot-2).\n7. Hit 'Run'.\n\n",
         "protocol-steps": "1. Transfer 23uL of master mix using the 200uL multichannel pipette from the reservoir on the temp module to wells A1-A12 on the PCR Plate in slot 3.\n2. Transfer 2uL of sample using the 20uL multichannel pipette from the sample PCR plate in slot 5 to the master mix PCR plate in slot 3 and mix twice.\n\n",
-        "title": "Protocol Title"
+        "title": "PCR Prep"
     },
     "modules": [
         "Temperature Module (GEN2)"
@@ -28,5 +28,5 @@
     "pipettes": "\nP300, 8 Channel Electronic Pipette (GEN2)\nP20, 8 Channel Electronic Pipette (GEN2)\n",
     "process": "\nInput your protocol parameters above.\nDownload your protocol and unzip if needed.\nUpload your custom labware to the OT App by navigating to More > Custom Labware > Add Labware, and selecting your labware files (.json extensions) if needed.\nUpload your protocol file (.py extension) to the OT App in the Protocol tab.\nSet up your deck according to the deck map.\nCalibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our support articles.\nHit 'Run'.\n",
     "protocol-steps": "\nTransfer 23uL of master mix using the 200uL multichannel pipette from the reservoir on the temp module to wells A1-A12 on the PCR Plate in slot 3.\nTransfer 2uL of sample using the 20uL multichannel pipette from the sample PCR plate in slot 5 to the master mix PCR plate in slot 3 and mix twice.\n",
-    "title": "Protocol Title"
+    "title": "PCR Prep"
 }

protocols/090c2e/README.md

@@ -1,44 +1,44 @@
 # Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit
 
-### Author
 
+### Author
 [Opentrons](https://opentrons.com/)
 
+
 ## Categories
+* Nucleic Acid Purification
+	* Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit
 
-- Nucleic Acid Purification
-  - Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit
 
 ## Description
-
 This protocol performs a nucleic acid purification according to the [Omega Bio-Tek Mag-Bind Environmental DNA 96 Kit](https://s3.amazonaws.com/pf-user-files-01/u-4256/uploads/2023-03-14/is13ts3/QMF27.0248.M5645%20v9.0%202.pdf).
 
+
 ### Modules
+* [Opentrons Magnetic Module (GEN2)](https://shop.opentrons.com/magnetic-module-gen2/)
 
-- [Opentrons Magnetic Module (GEN2)](https://shop.opentrons.com/magnetic-module-gen2/)
 
 ### Labware
+* QIAGEN 96 Tube Rack 1.2mL #19560
+* [NEST 12 Well Reservoir 15 mL #360102](http://www.cell-nest.com/page94?_l=en&product_id=102)
+* [NEST 1 Well Reservoir 195 mL #360103](http://www.cell-nest.com/page94?_l=en&product_id=102)
+* Opentrons 96 Filter Tip Rack 200 µL
+* [NEST 96 Well Plate 100 µL PCR Full Skirt #402501](http://www.cell-nest.com/page94?_l=en&product_id=97&product_category=96)
 
-- QIAGEN 96 Tube Rack 1.2mL #19560
-- [NEST 12 Well Reservoir 15 mL #360102](http://www.cell-nest.com/page94?_l=en&product_id=102)
-- [NEST 1 Well Reservoir 195 mL #360103](http://www.cell-nest.com/page94?_l=en&product_id=102)
-- Opentrons 96 Filter Tip Rack 200 µL
-- [NEST 96 Well Plate 100 µL PCR Full Skirt #402501](http://www.cell-nest.com/page94?_l=en&product_id=97&product_category=96)
 
 ### Pipettes
+* [Opentrons P300 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)
 
-- [Opentrons P300 8 Channel Electronic Pipette (GEN2)](https://shop.opentrons.com/8-channel-electronic-pipette/)
 
 ### Deck Setup
+![deck](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/deck.png)
 
-![deck](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/deckv2.png)
 
 ### Reagent Setup
+![reagents](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/reagents.png)
 
-![reagents](https://opentrons-protocol-library-website.s3.amazonaws.com/custom-README-images/090c2e/reagentsv2.png)
 
 ### Process
-
 1. Input your protocol parameters above.
 2. Download your protocol and unzip if needed.
 3. Upload your custom labware to the [OT App](https://opentrons.com/ot-app) by navigating to `More` > `Custom Labware` > `Add Labware`, and selecting your labware files (.json extensions) if needed.
@@ -47,10 +47,10 @@ This protocol performs a nucleic acid purification according to the [Omega Bio-T
 6. Calibrate your labware, tiprack and pipette using the OT App. For calibration tips, check out our [support articles](https://support.opentrons.com/en/collections/1559720-guide-for-getting-started-with-the-ot-2).
 7. Hit "Run".
 
-### Additional Notes
 
+### Additional Notes
 If you have any questions about this protocol, please contact the Protocol Development Team by filling out the [Troubleshooting Survey](https://protocol-troubleshooting.paperform.co/).
 
-###### Internal
 
+###### Internal
 090c2e

protocols/0dda91/README.md

@@ -1,4 +1,4 @@
-# Protocol Title (should match metadata of .py file)
+# 16S Library pooling
 
 ### Author
 [Opentrons](https://opentrons.com/)

protocols/0fdc01/README.md

@@ -1,5 +1,4 @@
-# Protocol Title
-PCR Prep
+# PCR Prep
 
 ### Author
 [Opentrons](https://opentrons.com/)