Test 11 10 update pl

.travis.yml

@@ -9,6 +9,7 @@ install:
   - pip install -e otcustomizers
   - pip install -r protolib/requirements.txt
   - pip install flake8==3.8.4 pytest
+  - deactivate
   - make setup
 
 addons:

Makefile

@@ -1,7 +1,7 @@
 SHELL := /bin/bash
 
 MONOREPO_URI := https://github.com/Opentrons/opentrons.git
-OT2_VERSION_TAG := v4.3.0
+OT2_VERSION_TAG := v6.1.0
 OT2_MONOREPO_DIR := ot2monorepoClone
 
 # Parsers output to here

protoBuilds/007992/rna_isolation.ot2.apiv2.py.json

@@ -4449,5 +4449,18 @@
         "protocolName": "Viral RNA Isolation (Magnetic Beads)",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw isolation plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        },
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw elution plate on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/010526/010526.ot2.apiv2.py.json

@@ -859,5 +859,18 @@
         "description": "Custom Protocol Request",
         "protocolName": "Restriction Digests"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "ThermocyclerContext at Thermocycler Module on 7 lw NEST 96 Well Plate 100 \u00b5L PCR Full Skirt on Thermocycler Module on 7",
+            "share": false,
+            "slot": "7",
+            "type": "thermocycler"
+        },
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Opentrons 24 Well Aluminum Block with Variant Tubes on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-2/04eeb1-part-2.ot2.apiv2.py.json

@@ -105,5 +105,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Synthesize First Strand cDNA"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-3/04eeb1-part-3.ot2.apiv2.py.json

@@ -190,5 +190,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Amplify cDNA"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-4/04eeb1-part-4.ot2.apiv2.py.json

@@ -135,5 +135,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Tagment PCR Amplicons"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-5/04eeb1-part-5.ot2.apiv2.py.json

@@ -123,5 +123,18 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Post Tagmentation Clean Up"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-6/04eeb1-part-6.ot2.apiv2.py.json

@@ -123,5 +123,18 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Amplify Tagmented Amplicons"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/04eeb1-part-7/04eeb1-part-7.ot2.apiv2.py.json

@@ -87,5 +87,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Pool and Clean Up Libraries"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/04eeb1/04eeb1.ot2.apiv2.py.json

@@ -99,5 +99,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "Illumina COVIDSeq Test: Anneal RNA"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/0556be-covid-mm-qc-v3/0556be-covid-mm-qc-v3.ot2.apiv2.py.json

@@ -74,5 +74,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "COVID MM-QC-v3 Protocol"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Opentrons 24 Well Aluminum Block with Generic 2 mL Screwcap on Temperature Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/0556be-covid-mm-qc/0556be-covid-mm-qc.ot2.apiv2.py.json

@@ -147,5 +147,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "COVID MM-QC Protocol"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Opentrons 24 Well Aluminum Block with Generic 2 mL Screwcap on Temperature Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/060c4f/060c4f.ot2.apiv2.py.json

@@ -4773,5 +4773,12 @@
         "protocolName": "96-well to 384-well transfer",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 4 lw Opentrons 96 Well Aluminum Block with NEST Well Plate 100 \u00b5L on Temperature Module GEN1 on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/08878b/08878b.ot2.apiv2.py.json

@@ -51,7 +51,7 @@
     ],
     "labware": [
         {
-            "name": "Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module GEN1 on 4",
+            "name": "Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module on 4",
             "share": false,
             "slot": "4",
             "type": "biorad_96_wellplate_200ul_pcr"
@@ -99,5 +99,12 @@
         "protocolName": "Transfer with Temperature Module",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module on 4 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/0944e4/ngs_cleanup.ot2.apiv2.py.json

@@ -1297,5 +1297,12 @@
         "protocolName": "NGS Library Cleanup with Ampure XP Beads",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw magnetic plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/0a23c6/0a23c6.ot2.apiv2.py.json

@@ -81,5 +81,12 @@
         "protocolName": "",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 9 lw Opentrons 96 Well Aluminum Block with NEST Well Plate 100 \u00b5L on Temperature Module GEN2 on 9",
+            "share": false,
+            "slot": "9",
+            "type": "tempdeck"
+        }
+    ]
 }

protoBuilds/0bf4f4-pt2/0bf4f4-pt2.ot2.apiv2.py.json

@@ -1328,5 +1328,12 @@
         "protocolName": "Ilumina DNA Prep Part 2 - Post Tagmentation Cleanup",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/0bf4f4-pt3/0bf4f4-pt3.ot2.apiv2.py.json

@@ -214,5 +214,12 @@
         "protocolName": "Ilumina DNA Prep Part 3 - Clean up Libraries",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }

protoBuilds/0e8e3/0e8e3.ot2.apiv2.py.json

@@ -2457,5 +2457,12 @@
         "protocolName": "PCR Prep",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Plate B (DNAse Dilution Plate) on Temperature Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "tempdeck"
+        }
+    ]
 }