Merge pull request #2 from jdgratz10/main

adding CI file

.github/workflows/test_workflow.yml

@@ -0,0 +1,230 @@
+# Run Tests
+
+name: Aviary Tests
+
+on:
+  # Trigger on push or pull request events for the main branch
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+
+  pre_commit:
+    if: github.repository_owner == 'OpenMDAO'
+    # run pre-commit checks
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v3
+      with:
+        python-version: '3.11'
+    - uses: pre-commit/[email protected]
+
+  test_ubuntu:
+    if: github.repository_owner == 'OpenMDAO'
+    runs-on: ubuntu-latest
+
+    timeout-minutes: 90
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          # oldest versions of openmdao/dymos
+          - NAME: oldest
+            PY: '3.9'
+            NUMPY: '1.20'
+            SCIPY: '1.6'
+            PYOPTSPARSE: 'v2.9.1'
+            SNOPT: '7.7'
+            OPENMDAO: '3.27'
+            DYMOS: '1.8.0'
+            extend: 0
+
+          # development versions of openmdao/dymos
+          - NAME: dev
+            PY: 3
+            NUMPY: 1
+            SCIPY: 1
+            PYOPTSPARSE: 'v2.9.1'
+            SNOPT: '7.7'
+            OPENMDAO: 'dev'
+            DYMOS: 'dev'
+            extend: 1
+
+          # latest versions of openmdao/dymos
+          - NAME: latest
+            PY: '3.10'
+            NUMPY: 1
+            SCIPY: 1
+            PYOPTSPARSE: 'v2.9.1'
+            SNOPT: '7.7'
+            OPENMDAO: 'latest'
+            DYMOS: 'latest'
+            extend: 0
+
+    steps:
+      - name: Display run details
+        run: |
+          echo "============================================================="
+          echo "Run #${GITHUB_RUN_NUMBER}"
+          echo "Run ID: ${GITHUB_RUN_ID}"
+          echo "Testing: ${GITHUB_REPOSITORY}"
+          echo "Triggered by: ${GITHUB_EVENT_NAME}"
+          echo "Initiated by: ${GITHUB_ACTOR}"
+          echo "============================================================="
+
+      - name: Create SSH key
+        shell: bash
+        env:
+          SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
+          SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}
+        run: |
+          mkdir -p ~/.ssh/
+          echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa
+          sudo chmod 600 ~/.ssh/id_rsa
+          echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts
+
+      - name: Setup miniconda
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.PY }}
+
+      - name: Install dependencies
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Install dependencies"
+          echo "============================================================="
+          conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} -q -y
+          conda install matplotlib pandas panel hvplot -q -y
+          pip install testflo pyxdsm -q
+
+      - name: Install pyOptSparse
+        if: matrix.PYOPTSPARSE
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Install pyoptsparse"
+          echo "============================================================="
+          if [[ "${{ matrix.SNOPT }}" == "7.7" && "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then
+            mkdir SNOPT
+            echo "  > Secure copying SNOPT 7.7 over SSH"
+            scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT
+            SNOPT="-s SNOPT/src"
+          elif [[ "${{ matrix.SNOPT }}" ]]; then
+            echo "SNOPT version ${{ matrix.SNOPT }} was requested but source is not available"
+          fi
+
+          conda config --add channels conda-forge
+
+          pip install git+https://github.com/OpenMDAO/build_pyoptsparse
+          build_pyoptsparse -v -b ${{ matrix.PYOPTSPARSE }} $SNOPT
+
+      - name: Install TeX Live
+        shell: bash
+        run: |
+          echo "============================================================="
+          echo "Install TeX Live (for pyXDSM)"
+          echo "============================================================="
+          sudo apt-get update
+          sudo apt-get install texlive-pictures texlive-latex-extra -y
+
+      - name: Install OpenMDAO
+        if: matrix.OPENMDAO
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Install OpenMDAO"
+          echo "============================================================="
+          if [[ "${{ matrix.OPENMDAO }}" == "dev" ]]; then
+            pip install git+https://github.com/OpenMDAO/OpenMDAO
+          elif [[ "${{ matrix.OPENMDAO }}" == "latest" ]]; then
+            pip install openmdao
+          else
+            pip install openmdao==${{ matrix.OPENMDAO }}
+          fi
+
+      - name: Install Dymos
+        if: matrix.DYMOS
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Install Dymos"
+          echo "============================================================="
+          if [[ "${{ matrix.DYMOS }}" == "dev" ]]; then
+            pip install git+https://github.com/OpenMDAO/Dymos
+          elif [[ "${{ matrix.DYMOS }}" == "latest" ]]; then
+            pip install dymos
+          else
+            pip install dymos==${{ matrix.DYMOS }}
+          fi
+
+      - name: Checkout Aviary
+        uses: actions/checkout@v2
+
+      - name: Install Aviary
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Install Aviary"
+          echo "============================================================="
+          pip install -e .[all]
+
+      - name: Display conda environment info
+        shell: bash -l {0}
+        run: |
+          conda info
+          conda list
+          conda env export --name test --file ${{ matrix.NAME }}_environment.yml
+
+      - name: 'Upload environment artifact'
+        uses: actions/upload-artifact@v3
+        with:
+          name: ${{ matrix.NAME }}_environment
+          path: ${{ matrix.NAME }}_environment.yml
+          retention-days: 5
+
+      - name: Generate specs
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Generate specs"
+          echo "============================================================="
+          cd aviary/xdsm
+          python run_all.py
+          cd ../..
+
+      - name: Run tests
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Run Tests"
+          echo "============================================================="
+          testflo . -n 1 --show_skipped --coverage --coverpkg aviary
+
+      - name: Build docs
+        if: matrix.extend
+        shell: bash -l {0}
+        run: |
+          pip install -U jupyter-book
+          cd aviary/docs
+          echo "============================================================="
+          echo "Build the docs"
+          echo "============================================================="
+          bash build_book.sh
+
+      - name: Scan for security issues
+        if: matrix.extend
+        shell: bash -l {0}
+        run: |
+          python -m pip install bandit
+          echo "============================================================="
+          echo "Run bandit scan for medium/high severity issues"
+          echo "============================================================="
+          cd $GITHUB_WORKSPACE
+          python -m bandit -r -ll aviary