Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

S1 extraction fixes - PR Re-opened #149

Merged
merged 14 commits into from
Sep 4, 2024
Merged
Show file tree
Hide file tree
Changes from 13 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
110 changes: 40 additions & 70 deletions src/openeo_gfmap/fetching/generic.py
Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
""" Generic extraction of features, supporting VITO backend.
"""

from functools import partial
from typing import Callable
from typing import Callable, Optional

import openeo
from openeo.rest import OpenEoApiError

from openeo_gfmap.backend import Backend, BackendContext
from openeo_gfmap.fetching import CollectionFetcher, FetchType, _log
Expand All @@ -28,15 +28,18 @@
"vapour-pressure": "AGERA5-VAPOUR",
"wind-speed": "AGERA5-WIND",
}
KNOWN_UNTEMPORAL_COLLECTIONS = ["COPERNICUS_30"]


def _get_generic_fetcher(collection_name: str, fetch_type: FetchType) -> Callable:
def _get_generic_fetcher(
collection_name: str, fetch_type: FetchType, backend: Backend
) -> Callable:
band_mapping: Optional[dict] = None

if collection_name == "COPERNICUS_30":
BASE_MAPPING = BASE_DEM_MAPPING
band_mapping = BASE_DEM_MAPPING
elif collection_name == "AGERA5":
BASE_MAPPING = BASE_WEATHER_MAPPING
else:
raise Exception("Please choose a valid collection.")
band_mapping = BASE_WEATHER_MAPPING

def generic_default_fetcher(
connection: openeo.Connection,
Expand All @@ -45,23 +48,34 @@ def generic_default_fetcher(
bands: list,
**params,
) -> openeo.DataCube:
bands = convert_band_names(bands, BASE_MAPPING)
if band_mapping is not None:
bands = convert_band_names(bands, band_mapping)

if (collection_name == "COPERNICUS_30") and (temporal_extent is not None):
if (collection_name in KNOWN_UNTEMPORAL_COLLECTIONS) and (
temporal_extent is not None
):
_log.warning(
"User set-up non None temporal extent for DEM collection. Ignoring it."
"Ignoring the temporal extent provided by the user as the collection %s is known to be untemporal.",
collection_name,
)
temporal_extent = None

cube = _load_collection(
connection,
bands,
collection_name,
spatial_extent,
temporal_extent,
fetch_type,
**params,
)
try:
cube = _load_collection(
connection,
bands,
collection_name,
spatial_extent,
temporal_extent,
fetch_type,
**params,
)
except OpenEoApiError as e:
if "CollectionNotFound" in str(e):
raise ValueError(
f"Collection {collection_name} not found in the selected backend {backend.value}."
) from e
raise e

# # Apply if the collection is a GeoJSON Feature collection
# if isinstance(spatial_extent, GeoJSON):
Expand All @@ -76,12 +90,11 @@ def _get_generic_processor(collection_name: str, fetch_type: FetchType) -> Calla
"""Builds the preprocessing function from the collection name as it stored
in the target backend.
"""
band_mapping: Optional[dict] = None
if collection_name == "COPERNICUS_30":
BASE_MAPPING = BASE_DEM_MAPPING
band_mapping = BASE_DEM_MAPPING
elif collection_name == "AGERA5":
BASE_MAPPING = BASE_WEATHER_MAPPING
else:
raise Exception("Please choose a valid collection.")
band_mapping = BASE_WEATHER_MAPPING

def generic_default_processor(cube: openeo.DataCube, **params):
"""Default collection preprocessing method for generic datasets.
Expand All @@ -99,51 +112,14 @@ def generic_default_processor(cube: openeo.DataCube, **params):
if collection_name == "COPERNICUS_30":
cube = cube.min_time()

cube = rename_bands(cube, BASE_MAPPING)
if band_mapping is not None:
cube = rename_bands(cube, band_mapping)

return cube

return generic_default_processor


OTHER_BACKEND_MAP = {
"AGERA5": {
Backend.TERRASCOPE: {
"fetch": partial(_get_generic_fetcher, collection_name="AGERA5"),
"preprocessor": partial(_get_generic_processor, collection_name="AGERA5"),
},
Backend.CDSE: {
"fetch": partial(_get_generic_fetcher, collection_name="AGERA5"),
"preprocessor": partial(_get_generic_processor, collection_name="AGERA5"),
},
Backend.FED: {
"fetch": partial(_get_generic_fetcher, collection_name="AGERA5"),
"preprocessor": partial(_get_generic_processor, collection_name="AGERA5"),
},
},
"COPERNICUS_30": {
Backend.TERRASCOPE: {
"fetch": partial(_get_generic_fetcher, collection_name="COPERNICUS_30"),
"preprocessor": partial(
_get_generic_processor, collection_name="COPERNICUS_30"
),
},
Backend.CDSE: {
"fetch": partial(_get_generic_fetcher, collection_name="COPERNICUS_30"),
"preprocessor": partial(
_get_generic_processor, collection_name="COPERNICUS_30"
),
},
Backend.FED: {
"fetch": partial(_get_generic_fetcher, collection_name="COPERNICUS_30"),
"preprocessor": partial(
_get_generic_processor, collection_name="COPERNICUS_30"
),
},
},
}


def build_generic_extractor(
backend_context: BackendContext,
bands: list,
Expand All @@ -152,13 +128,7 @@ def build_generic_extractor(
**params,
) -> CollectionFetcher:
"""Creates a generic extractor adapted to the given backend. Currently only tested with VITO backend"""
backend_functions = OTHER_BACKEND_MAP.get(collection_name).get(
backend_context.backend
)

fetcher, preprocessor = (
backend_functions["fetch"](fetch_type=fetch_type),
backend_functions["preprocessor"](fetch_type=fetch_type),
)
fetcher = _get_generic_fetcher(collection_name, fetch_type, backend_context.backend)
preprocessor = _get_generic_processor(collection_name, fetch_type)

return CollectionFetcher(backend_context, bands, fetcher, preprocessor, **params)
4 changes: 1 addition & 3 deletions src/openeo_gfmap/fetching/s1.py
Original file line number Diff line number Diff line change
Expand Up @@ -67,16 +67,14 @@ def s1_grd_fetch_default(
"""
bands = convert_band_names(bands, BASE_SENTINEL1_GRD_MAPPING)

load_collection_parameters = params.get("load_collection", {})

cube = _load_collection(
connection,
bands,
collection_name,
spatial_extent,
temporal_extent,
fetch_type,
**load_collection_parameters,
**params,
)

if fetch_type is not FetchType.POINT and isinstance(spatial_extent, GeoJSON):
Expand Down
Loading
Loading