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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 906 455

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 223 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 275 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 58

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 318 repositories
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 14 Apache-2.0 15 1 2 Updated Dec 24, 2024
  • InspectOMOP Public

    InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.

    OHDSI/InspectOMOP’s past year of commit activity
    Python 14 AGPL-3.0 2 0 1 Updated Dec 24, 2024
  • Ares Public

    A Research Exploration System

    OHDSI/Ares’s past year of commit activity
    Vue 12 Apache-2.0 7 34 3 Updated Dec 23, 2024
  • CohortConstructor Public
    OHDSI/CohortConstructor’s past year of commit activity
    R 1 Apache-2.0 0 37 3 Updated Dec 23, 2024
  • drat Public

    drat repository for OHDSI R packages

    OHDSI/drat’s past year of commit activity
    5 7 0 0 Updated Dec 22, 2024
  • DataQualityDashboard Public

    A tool to help improve data quality standards in observational data science.

    OHDSI/DataQualityDashboard’s past year of commit activity
    JavaScript 149 Apache-2.0 97 54 (4 issues need help) 6 Updated Dec 22, 2024
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 1 Apache-2.0 0 7 (1 issue needs help) 0 Updated Dec 22, 2024
  • ETL-Synthea Public

    A package supporting the conversion from Synthea CSV to OMOP CDM

    OHDSI/ETL-Synthea’s past year of commit activity
    R 100 73 2 0 Updated Dec 20, 2024
  • gaiaDB Public

    A staging database and collection of transformation recipes for public place-based datasets

    OHDSI/gaiaDB’s past year of commit activity
    Python 1 0 37 0 Updated Dec 20, 2024
  • gaiaCore Public

    An R Package for interacting with gaiaDB - part of the OHDSI GIS Gaia toolchain

    OHDSI/gaiaCore’s past year of commit activity
    R 2 Apache-2.0 0 22 0 Updated Dec 20, 2024
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