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Add 2 new properties for fuzzy positions #38

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Add 2 new properties for fuzzy positions #38

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37 changes: 34 additions & 3 deletions faldo.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -81,7 +81,13 @@
rdf:type owl:Class ;
rdfs:comment "A position that lacks exact data."^^xsd:string ;
rdfs:label "Fuzzy position"^^xsd:string ;
rdfs:subClassOf :Position .
rdfs:subClassOf :Position ;
rdfs:subClassOf
[ rdf:type owl:Restriction ;
owl:onProperty :probability ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange owl:float
] .

:InBetweenPosition
rdf:type owl:Class ;
Expand Down Expand Up @@ -136,7 +142,13 @@
rdf:type owl:Class ;
rdfs:comment "The position is known to be one of the more detailed positions listed by the location predicate."^^xsd:string ;
rdfs:label "One of positions"^^xsd:string ;
rdfs:subClassOf :FuzzyPosition ;
rdfs:subClassOf :FuzzyPosition ;
rdfs:subClassOf
[ rdf:type owl:Restriction ;
owl:onProperty :possiblePosition ;
owl:minQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass :Position
] ;
owl:disjointWith :ExactPosition , :InRangePosition , :InBetweenPosition .

:Position
Expand Down Expand Up @@ -252,4 +264,23 @@
:reference
rdf:type owl:ObjectProperty ;
rdfs:comment "The reference is the resource that the position value is anchored to. For example, a contig or chromosome in a genome assembly."^^xsd:string ;
rdfs:label "reference"^^xsd:string .
rdfs:label "reference"^^xsd:string .

:possiblePosition
rdf:type owl:ObjectProperty ;
rdfs:comment "One of the possible positions listed for a OneOfPosition element."^^xsd:string ; ;
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This line ends with ; ; instead of just one. could lead to issues.

rdfs:label "possiblePosition"^^xsd:string ;
rdfs:domain :OneOfPosition ;
rdfs:range :Position .

:probability
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I think the probability part should come in a different pull request. I think for clean modelling it should be inverted and should not be attached to :FuzzyPosition as even an :ExactPosition can have a probability funcion associated with it.

rdfs:type owl:DatatypeProperty ;
rdfs:comment "A probability value possibly attached to a fuzzy position."^^xsd:string ;
rdfs:label "probability"^^xsd:string ;
rdfs:domain :FuzzyPosition ;
rdfs:range
[ rdf:type rdfs:Datatype ;
owl:onDatatype xsd:float ;
owl:withRestrictions
([ xsd:minInclusive "0.0"^^xsd:float ] [ xsd:maxInclusive "1.0"^^xsd:float])
] .