2023-03-14

This release fixes issues with nextflow versions in the run script, local use on Saga.

2022_08_v2

In this release, the following has been done:

• all tools have been put in their own conda envs
• all tools have thus been updated
• command lines have been modified and updated
• multiqc has been added to the end to process all of the output
• prokka has been removed since it was broken on saga.

Specific genes finding in working order

This is a bug fix release. The specific gene finding module was not working properly. This version fixes this problem.

Saga release

This release is updated to run on the Saga sigma2 cluster.

v1.1

Release v1.1

2019-09-05

Release modifying the runscript

2018-11-04: Merge pull request #10 from karinlag/master

Fixing precmd, savemode and javaopts for pilon