Modify function names

NicolasSompairac · Dec 8, 2017 · c92697d · c92697d
1 parent cac503b
commit c92697d
Show file tree

Hide file tree

Showing 5 changed files with 8 additions and 8 deletions.
diff --git a/src/visualization/metabolicCartography/findMetsFromCompartInMap.m b/src/visualization/metabolicCartography/findMetsFromCompartInMap.m
@@ -1,4 +1,4 @@
-function [mets, id] = findMetFromCompartMap(map, compartment)
+function [mets, id] = findMetsFromCompartInMap(map, compartment)
 % Finds all the metabolites and their names in the map structure for
 % a compartment of interest.
 %

diff --git a/src/visualization/metabolicCartography/findMetsInMap.m b/src/visualization/metabolicCartography/findMetsInMap.m
@@ -1,4 +1,4 @@
-function [metID] = findMetIDs(map, metList)
+function [metID] = findMetsInMap(map, metList)
 % Finds metabolites indices in a CellDesigner map for a given list of names
 %
 % USAGE:

diff --git a/src/visualization/metabolicCartography/findRxnsFromCompartInMap.m b/src/visualization/metabolicCartography/findRxnsFromCompartInMap.m
@@ -1,4 +1,4 @@
-function [rxns, id] = findRxnFromCompartMap(map, compartment)
+function [rxns, id] = findRxnsFromCompartInMap(map, compartment)
 % Finds all the reactions and their names in the map structure for
 % a compartment of interest.
 %
@@ -11,7 +11,7 @@
 %    compartment:       Compartment of interest (e.g.: '[m]','[n]','[e]',etc.)
 %
 % OUTPUTS:
-%    mets:              List of reaction names
+%    rxns:              List of reaction names
 %    id:                Reactions indexes
 %
 % .. Authors:

diff --git a/src/visualization/metabolicCartography/findRxnsInMap.m b/src/visualization/metabolicCartography/findRxnsInMap.m
@@ -1,4 +1,4 @@
-function [rxnID, rxnIDref] = findRxnIDs(map, rxnList)
+function [rxnID, rxnIDref] = findRxnsInMap(map, rxnList)
 % Finds reaction indices in a CellDesigner map from a list of names
 %
 % USAGE:
@@ -18,10 +18,10 @@
 %       - N.Sompairac - Institut Curie, Paris, 11/10/2017
 
     if (iscell(rxnList))
-        [~,rxnID] = ismember(rxnList,map.rxnName);
+        [~,rxnID] = ismember(rxnList, map.rxnName);
         rxnIDref = map.rxnID(rxnID);
     else
-        rxnID = find(strcmp(map.rxnName,rxnList));
+        rxnID = find(strcmp(map.rxnName, rxnList));
         if (isempty(rxnID))
             rxnID = 0;
             rxnIDref = {};

diff --git a/src/visualization/metabolicCartography/findRxnsPerTypeInMap.m b/src/visualization/metabolicCartography/findRxnsPerTypeInMap.m
@@ -1,4 +1,4 @@
-function [listRxns] = findRxnsPerType(map, rxnType)
+function [listRxns] = findRxnsPerTypeInMap(map, rxnType)
 % Finds reaction names based on the type of reactions in the map. Useful
 % to look for transport, catalysis or simple state_transition.
 %