Port SpikeInterface update for tutorial generation #917
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CodyCBakerPhD
changed the title
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Looks like GitHubs just having bad service all around today |
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@alejoe91 Looks like we get this error: https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/10491656279/job/29061326476?pr=917#step:13:178 Traceback (most recent call last):
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask/app.py", line 1484, in full_dispatch_request
rv = self.dispatch_request()
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask/app.py", line 1469, in dispatch_request
return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask_restx/api.py", line 404, in wrapper
resp = resource(*args, **kwargs)
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask/views.py", line 109, in view
return current_app.ensure_sync(self.dispatch_request)(**kwargs)
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/flask_restx/resource.py", line 46, in dispatch_request
resp = meth(*args, **kwargs)
File "/home/runner/work/nwb-guide/nwb-guide/src/pyflask/namespaces/data.py", line 19, in post
generate_test_data(output_path=arguments["output_path"])
File "/home/runner/work/nwb-guide/nwb-guide/src/pyflask/manageNeuroconv/manage_neuroconv.py", line [173](https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/10491656279/job/29061326476?pr=917#step:13:174)6, in generate_test_data
spikeinterface.exporters.export_to_phy(
File "/home/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/spikeinterface/exporters/to_phy.py", line 184, in export_to_phy
assert templates_ext is not None, "export_to_phy requires a SortingAnalyzer with the extension 'templates'"
AssertionError: export_to_phy requires a SortingAnalyzer with the extension 'templates'Were you able to run the isolated helper function successfully on your end? (like, just a copy/paste into ipython or similar?) |
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@alejoe91 Any ideas? |
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@alejoe91 ping |
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fix #914
replace #916
GitHub was being slow to change the merge target (took like 10 minutes to allow merge) so in less time than that I just ported over the essential changes
Let's see what CI says