Skip to content
@NaegleLab

NaegleLab

Popular repositories Loading

  1. OpenEnsembles OpenEnsembles Public

    Code for ensemble clustering

    Jupyter Notebook 102 16

  2. KSTAR KSTAR Public

    Kinase-Substrate Translation to Activity Relationships

    Python 7 1

  3. ASPEN ASPEN Public

    ASPEN repository, associated with 2019 publication

    Python 3 3

  4. KSTAR_Applications KSTAR_Applications Public

    Code demonstrating KSTAR examples and as published

    Jupyter Notebook 1 2

  5. TNBC_KSTAR_Analysis TNBC_KSTAR_Analysis Public

    Code used for the analysis of active kinases across triple negative breast cancer patients

    Jupyter Notebook 1

  6. ProteomeScout ProteomeScout Public

    PHP

Repositories

Showing 10 of 18 repositories
  • KSTAR Public

    Kinase-Substrate Translation to Activity Relationships

    Python 7 1 16 0 Updated May 14, 2025
  • BivalentModeling_tanSH2 Public

    Adaptation of Errington et al. Matlab code to predict tandem SH2 domain interactions

    Jupyter Notebook 0 MIT 0 0 0 Updated May 13, 2025
  • proteome-scout-3 Public
    Python 0 0 10 1 Updated May 8, 2025
  • ASPEN Public

    ASPEN repository, associated with 2019 publication

    Python 3 GPL-3.0 3 0 0 Updated Apr 25, 2025
  • ExonPTMapper Public

    Python package for processing exon information from Ensembl/Biomart, mapping this information to PTM information from ProteomeScout, and doing downstream analysis

    Python 0 GPL-3.0 0 0 0 Updated Apr 24, 2025
  • PTM-POSE Public

    Python package for projecting PTMs onto any splice event quantification data, such as those from MATS or SpliceSeq

    Python 0 GPL-3.0 0 0 0 Updated Apr 24, 2025
  • CoDIAC Public
    Python 0 1 3 0 Updated Apr 24, 2025
  • ProteomeScoutAPI Public
    Python 0 GPL-3.0 0 6 0 Updated Apr 24, 2025
  • OpenEnsembles Public

    Code for ensemble clustering

    Jupyter Notebook 102 GPL-3.0 16 1 0 Updated Apr 24, 2025
  • PTM_Splicing_Analysis Public

    Contains all code used to generate data and figures for the following manuscript:

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 17, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.