Qualification tool: Add penalty for row conversions

core/src/main/scala/com/nvidia/spark/rapids/tool/qualification/QualOutputWriter.scala

@@ -391,6 +391,7 @@ object QualOutputWriter {
   val ESTIMATED_GPU_SPEEDUP = "Estimated GPU Speedup"
   val ESTIMATED_GPU_TIMESAVED = "Estimated GPU Time Saved"
   val STAGE_ESTIMATED_STR = "Stage Estimated"
+  val NUM_TRANSITIONS = "Number of CPU-GPU Transitions"
   val UNSUPPORTED_EXECS = "Unsupported Execs"
   val UNSUPPORTED_EXPRS = "Unsupported Expressions"
   val CLUSTER_TAGS = "Cluster Tags"
@@ -856,7 +857,8 @@ object QualOutputWriter {
       AVERAGE_SPEEDUP_STR -> AVERAGE_SPEEDUP_STR.size,
       STAGE_DUR_STR -> STAGE_DUR_STR.size,
       UNSUPPORTED_TASK_DURATION_STR -> UNSUPPORTED_TASK_DURATION_STR.size,
-      STAGE_ESTIMATED_STR -> STAGE_ESTIMATED_STR.size
+      STAGE_ESTIMATED_STR -> STAGE_ESTIMATED_STR.size,
+      NUM_TRANSITIONS -> NUM_TRANSITIONS.size
     )
     detailedHeadersAndFields
   }
@@ -878,7 +880,8 @@ object QualOutputWriter {
           headersAndSizes(AVERAGE_SPEEDUP_STR),
         info.stageTaskTime.toString -> headersAndSizes(STAGE_DUR_STR),
         info.unsupportedTaskDur.toString -> headersAndSizes(UNSUPPORTED_TASK_DURATION_STR),
-        info.estimated.toString -> headersAndSizes(STAGE_ESTIMATED_STR))
+        info.estimated.toString -> headersAndSizes(STAGE_ESTIMATED_STR),
+        info.numTransitions.toString -> headersAndSizes(NUM_TRANSITIONS))
       constructOutputRow(data, delimiter, prettyPrint)
     }
   }

core/src/main/scala/com/nvidia/spark/rapids/tool/qualification/Qualification.scala

@@ -34,7 +34,8 @@ class Qualification(outputDir: String, numRows: Int, hadoopConf: Configuration,
     timeout: Option[Long], nThreads: Int, order: String,
     pluginTypeChecker: PluginTypeChecker, reportReadSchema: Boolean,
     printStdout: Boolean, uiEnabled: Boolean, enablePB: Boolean,
-    reportSqlLevel: Boolean, maxSQLDescLength: Int, mlOpsEnabled:Boolean) extends Logging {
+    reportSqlLevel: Boolean, maxSQLDescLength: Int, mlOpsEnabled:Boolean,
+    ignoreTransitions: Boolean) extends Logging {
 
   private val allApps = new ConcurrentLinkedQueue[QualificationSummaryInfo]()
 
@@ -166,7 +167,7 @@ class Qualification(outputDir: String, numRows: Int, hadoopConf: Configuration,
     try {
       val startTime = System.currentTimeMillis()
       val appResult = QualificationAppInfo.createApp(path, hadoopConf, pluginTypeChecker,
-        reportSqlLevel, mlOpsEnabled)
+        reportSqlLevel, mlOpsEnabled, ignoreTransitions)
       val qualAppResult = appResult match {
         case Left(errorMessage: String) =>
           // Case when an error occurred during QualificationAppInfo creation

core/src/main/scala/com/nvidia/spark/rapids/tool/qualification/QualificationArgs.scala

@@ -112,6 +112,11 @@ Usage: java -cp rapids-4-spark-tools_2.12-<version>.jar:$SPARK_HOME/jars/*
     opt[Boolean](required = false,
       descr = "Whether to parse ML functions in the eventlogs. Default is false.",
       default = Some(false))
+  val ignoreTransitions: ScallopOption[Boolean] =
+    opt[Boolean](required = false,
+      descr = "Whether to ignore durations for ColumnarToRow and RowToColumnar transitions " +
+        "in the eventlogs while calculating the speedup. Default is false.",
+      default = Some(false))
   val sparkProperty: ScallopOption[List[String]] =
     opt[List[String]](required = false,
       descr = "Filter applications based on certain Spark properties that were set during " +

core/src/main/scala/com/nvidia/spark/rapids/tool/qualification/QualificationMain.scala

@@ -60,6 +60,7 @@ object QualificationMain extends Logging {
     val reportSqlLevel = appArgs.perSql.getOrElse(false)
     val platform = appArgs.platform.getOrElse("onprem")
     val mlOpsEnabled = appArgs.mlFunctions.getOrElse(false)
+    val ignoreTransitions = appArgs.ignoreTransitions.getOrElse(false)
 
     val hadoopConf = RapidsToolsConfUtil.newHadoopConf
 
@@ -93,7 +94,7 @@ object QualificationMain extends Logging {
 
     val qual = new Qualification(outputDirectory, numOutputRows, hadoopConf, timeout,
       nThreads, order, pluginTypeChecker, reportReadSchema, printStdout, uiEnabled,
-      enablePB, reportSqlLevel, maxSQLDescLength, mlOpsEnabled)
+      enablePB, reportSqlLevel, maxSQLDescLength, mlOpsEnabled, ignoreTransitions)
     val res = qual.qualifyApps(filteredLogs)
     (0, res)
   }

core/src/main/scala/org/apache/spark/sql/rapids/tool/qualification/QualificationAppInfo.scala

@@ -16,6 +16,8 @@
 
 package org.apache.spark.sql.rapids.tool.qualification
 
+import java.util.concurrent.TimeUnit
+
 import scala.collection.mutable.{ArrayBuffer, HashMap}
 
 import com.nvidia.spark.rapids.tool.EventLogInfo
@@ -37,7 +39,8 @@ class QualificationAppInfo(
     pluginTypeChecker: PluginTypeChecker,
     reportSqlLevel: Boolean,
     perSqlOnly: Boolean = false,
-    mlOpsEnabled: Boolean = false)
+    mlOpsEnabled: Boolean = false,
+    ignoreTransitions: Boolean = false)
   extends AppBase(eventLogInfo, hadoopConf) with Logging {
 
   var appId: String = ""
@@ -51,6 +54,7 @@ class QualificationAppInfo(
     HashMap.empty[Long, StageTaskQualificationSummary]
   val stageIdToTaskEndSum: HashMap[Long, StageTaskQualificationSummary] =
     HashMap.empty[Long, StageTaskQualificationSummary]
+  val stageIdToGpuCpuTransitions: HashMap[Int, Int] = HashMap.empty[Int, Int]
 
   val stageIdToSqlID: HashMap[Int, Long] = HashMap.empty[Int, Long]
   val sqlIDtoFailures: HashMap[Long, ArrayBuffer[String]] = HashMap.empty[Long, ArrayBuffer[String]]
@@ -147,8 +151,10 @@ class QualificationAppInfo(
 
   // Look at the total task times for all jobs/stages that aren't SQL or
   // SQL but dataset or rdd
-  private def calculateNonSQLTaskDataframeDuration(taskDFDuration: Long): Long = {
-    val allTaskTime = stageIdToTaskEndSum.values.map(_.totalTaskDuration).sum
+  private def calculateNonSQLTaskDataframeDuration(
+      taskDFDuration: Long,
+      totalTransitionTime: Long): Long = {
+    val allTaskTime = stageIdToTaskEndSum.values.map(_.totalTaskDuration).sum + totalTransitionTime
     val res = allTaskTime - taskDFDuration
     assert(res >= 0)
     res
@@ -241,13 +247,78 @@ class QualificationAppInfo(
     stages.map { stageId =>
       val stageTaskTime = stageIdToTaskEndSum.get(stageId)
         .map(_.totalTaskDuration).getOrElse(0L)
+      val numTransitions = ignoreTransitions match {
+        case false => stageIdToGpuCpuTransitions.getOrElse(stageId, 0)
+        case true => 0
+      }
+      val transitionsTime = numTransitions match {
+        case 0 => 0L // no transitions
+        case gpuCpuTransitions if gpuCpuTransitions > 0 =>
+          // Duration to transfer data from GPU to CPU and vice versa.
+          // Assuming it's a PCI-E Gen3, but also assuming that some of the result could be
+          // spilled to disk.
+          // Duration in Spark metrics is in milliseconds and CPU-GPU transfer rate is in bytes/sec.
+          // So we need to convert the transitions time to milliseconds.
+          val totalBytesRead = {
+            stageIdToTaskEndSum.get(stageId).map(_.totalbytesRead).getOrElse(0L)
+          }
+          if (totalBytesRead > 0) {
+            (TimeUnit.SECONDS.toMillis(totalBytesRead /
+              QualificationAppInfo.CPU_GPU_TRANSFER_RATE) * gpuCpuTransitions)
+          } else {
+            0L
+          }
+
+        case _ => 0L
+      }
+      val finalEachStageUnsupported = if (transitionsTime != 0) {
+        (allStageTaskTime * numUnsupported.size / allFlattenedExecs.size.toDouble).toLong
+      } else {
+        eachStageUnsupported
+      }
+
       StageQualSummaryInfo(stageId, allSpeedupFactorAvg, stageTaskTime,
-        eachStageUnsupported, estimated)
+        finalEachStageUnsupported, numTransitions, transitionsTime, estimated)
     }.toSet
   }
 
   def summarizeStageLevel(execInfos: Seq[ExecInfo], sqlID: Long): Set[StageQualSummaryInfo] = {
     val (allStagesToExecs, execsNoStage) = getStageToExec(execInfos)
+
+    // Get the total number of transitions between CPU and GPU for each stage and
+    // store it in a Map.
+    allStagesToExecs.foreach { case (stageId, execs) =>
+      // Flatten all the Execs within a stage.
+      // Example: Exchange;WholeStageCodegen (14);Exchange;WholeStageCodegen (13);Exchange
+      // will be flattened to Exchange;Sort;Exchange;Sort;SortMergeJoin;SortMergeJoin;Exchange;
+      val allExecs = execs.map(x => if (x.exec.startsWith("WholeStage")) {
+        x.children.getOrElse(Seq.empty)
+      } else {
+        Seq(x)
+      }).flatten.reverse
+
+      // If it's a shuffle stage, then we need to keep the first and last Exchange and remove
+      // all the intermediate Exchanges as input size is captured in Exchange node.
+      val dedupedExecs = if (allExecs.size > 2) {
+        allExecs.head +:
+          allExecs.tail.init.filter(x => x.exec != "Exchange") :+ allExecs.last
+      } else {
+        allExecs
+      }
+      // Create a list of transitions by zipping allExecs with itself but with the first element
+      // This will create a list of adjacent pairs.
+      // Example: If allExecs = (ScanExec, FilterExec, SortExec, ProjectExec), then it will create
+      // a list of tuples as follows:
+      // (ScanExec, FilterExec), (FilterExec, SortExec), (SortExec, ProjectExec)
+      val transitions = dedupedExecs.zip(dedupedExecs.drop(1)).count {
+        // If the current execution (currExec) is supported, and the next execution (nextExec)
+        // is not supported, or if the current execution is not supported and the next execution
+        // is supported, then we consider this as a transition.
+        case (currExec, nextExec) => (currExec.isSupported && !nextExec.isSupported) ||
+          (!currExec.isSupported && nextExec.isSupported)
+      }
+      stageIdToGpuCpuTransitions(stageId) = transitions
+    }
     if (allStagesToExecs.isEmpty) {
       // use job level
       // also get the job ids associated with the SQLId
@@ -302,7 +373,7 @@ class QualificationAppInfo(
         val numUnsupportedExecs = execInfos.filterNot(_.isSupported).size
         // This is a guestimate at how much wall clock was supported
         val numExecs = execInfos.size.toDouble
-        val numSupportedExecs = (numExecs - numUnsupportedExecs).toDouble
+        val numSupportedExecs = (numExecs - numUnsupportedExecs)
         val ratio = numSupportedExecs / numExecs
         val estimateWallclockSupported = (sqlWallClockDuration * ratio).toInt
         // don't worry about supported execs for these are these are mostly indicator of I/O
@@ -428,11 +499,12 @@ class QualificationAppInfo(
       val allStagesSummary = perSqlStageSummary.flatMap(_.stageSum)
         .map(sum => sum.stageId -> sum).toMap.values.toSeq
       val sqlDataframeTaskDuration = allStagesSummary.map(s => s.stageTaskTime).sum
+      val totalTransitionsTime = allStagesSummary.map(s=> s.transitionTime).sum
       val unsupportedSQLTaskDuration = calculateSQLUnsupportedTaskDuration(allStagesSummary)
       val endDurationEstimated = this.appEndTime.isEmpty && appDuration > 0
       val jobOverheadTime = calculateJobOverHeadTime(info.startTime)
       val nonSQLDataframeTaskDuration =
-        calculateNonSQLTaskDataframeDuration(sqlDataframeTaskDuration)
+        calculateNonSQLTaskDataframeDuration(sqlDataframeTaskDuration, totalTransitionsTime)
       val nonSQLTaskDuration = nonSQLDataframeTaskDuration + jobOverheadTime
       // note that these ratios are based off the stage times which may be missing some stage
       // overhead or execs that didn't have associated stages
@@ -489,7 +561,8 @@ class QualificationAppInfo(
 
       // get the ratio based on the Task durations that we will use for wall clock durations
       val estimatedGPURatio = if (sqlDataframeTaskDuration > 0) {
-        supportedSQLTaskDuration.toDouble / sqlDataframeTaskDuration.toDouble
+        supportedSQLTaskDuration.toDouble / (
+          sqlDataframeTaskDuration.toDouble + totalTransitionsTime.toDouble)
       } else {
         1
       }
@@ -670,7 +743,8 @@ class StageTaskQualificationSummary(
     val stageAttemptId: Int,
     var executorRunTime: Long,
     var executorCPUTime: Long,
-    var totalTaskDuration: Long)
+    var totalTaskDuration: Long,
+    var totalbytesRead: Long)
 
 case class QualApplicationInfo(
     appName: String,
@@ -736,6 +810,8 @@ case class StageQualSummaryInfo(
     averageSpeedup: Double,
     stageTaskTime: Long,
     unsupportedTaskDur: Long,
+    numTransitions: Int,
+    transitionTime: Long,
     estimated: Boolean = false)
 
 object QualificationAppInfo extends Logging {
@@ -746,6 +822,13 @@ object QualificationAppInfo extends Logging {
   val NOT_APPLICABLE = "Not Applicable"
   val LOWER_BOUND_RECOMMENDED = 1.3
   val LOWER_BOUND_STRONGLY_RECOMMENDED = 2.5
+  // Below is the total time taken whenever there are ColumnarToRow or RowToColumnar transitions
+  // This includes the time taken to convert the data from one format to another and the time taken
+  // to transfer the data from CPU to GPU and vice versa. Current transfer rate is 1GB/s and is
+  // based on the testing on few candidate eventlogs.
+  // TODO: Need to test this on more eventlogs including NDS queries
+  //  and come up with a better transfer rate.
+  val CPU_GPU_TRANSFER_RATE = 1000000000L
 
   private def handleException(e: Exception, path: EventLogInfo): String = {
     val message: String = e match {
@@ -838,10 +921,11 @@ object QualificationAppInfo extends Logging {
       hadoopConf: Configuration,
       pluginTypeChecker: PluginTypeChecker,
       reportSqlLevel: Boolean,
-      mlOpsEnabled: Boolean): Either[String, QualificationAppInfo] = {
+      mlOpsEnabled: Boolean,
+      ignoreTransitions: Boolean): Either[String, QualificationAppInfo] = {
     try {
         val app = new QualificationAppInfo(Some(path), Some(hadoopConf), pluginTypeChecker,
-          reportSqlLevel, false, mlOpsEnabled)
+          reportSqlLevel, false, mlOpsEnabled, ignoreTransitions)
         logInfo(s"${path.eventLog.toString} has App: ${app.appId}")
         Right(app)
       } catch {

core/src/main/scala/org/apache/spark/sql/rapids/tool/qualification/QualificationEventProcessor.scala

@@ -72,16 +72,26 @@ class QualificationEventProcessor(app: QualificationAppInfo, perSqlOnly: Boolean
     super.doSparkListenerTaskEnd(app, event)
     // keep all stage task times to see for nonsql duration
     val taskSum = app.stageIdToTaskEndSum.getOrElseUpdate(event.stageId, {
-      new StageTaskQualificationSummary(event.stageId, event.stageAttemptId, 0, 0, 0)
+      new StageTaskQualificationSummary(event.stageId, event.stageAttemptId, 0, 0, 0, 0)
     })
     taskSum.executorRunTime += event.taskMetrics.executorRunTime
     taskSum.executorCPUTime += NANOSECONDS.toMillis(event.taskMetrics.executorCpuTime)
     taskSum.totalTaskDuration += event.taskInfo.duration
+    // Add the total bytes read from the task if it's available. This is from inputMetrics if
+    // it is reading from datasource, or shuffleReadMetrics if it is reading from shuffle.
+    val inputMetrics = event.taskMetrics.inputMetrics
+    if (inputMetrics != null) {
+      taskSum.totalbytesRead += inputMetrics.bytesRead
+    }
+    val shuffleReadMetrics = event.taskMetrics.shuffleReadMetrics
+    if (shuffleReadMetrics != null) {
+      taskSum.totalbytesRead += shuffleReadMetrics.totalBytesRead
+    }
 
     // Adds in everything (including failures)
     app.stageIdToSqlID.get(event.stageId).foreach { sqlID =>
       val taskSum = app.sqlIDToTaskEndSum.getOrElseUpdate(sqlID, {
-        new StageTaskQualificationSummary(event.stageId, event.stageAttemptId, 0, 0, 0)
+        new StageTaskQualificationSummary(event.stageId, event.stageAttemptId, 0, 0, 0, 0)
       })
       taskSum.executorRunTime += event.taskMetrics.executorRunTime
       taskSum.executorCPUTime += NANOSECONDS.toMillis(event.taskMetrics.executorCpuTime)

core/src/test/scala/com/nvidia/spark/rapids/tool/planparser/SqlPlanParserSuite.scala

@@ -76,7 +76,7 @@ class SQLPlanParserSuite extends BaseTestSuite {
     val pluginTypeChecker = new PluginTypeChecker()
     assert(allEventLogs.size == 1)
     val appResult = QualificationAppInfo.createApp(allEventLogs.head, hadoopConf,
-      pluginTypeChecker, reportSqlLevel = false, mlOpsEnabled = false)
+      pluginTypeChecker, reportSqlLevel = false, mlOpsEnabled = false, ignoreTransitions = false)
     appResult match {
       case Right(app) => app
       case Left(_) => throw new AssertionError("Cannot create application")
@@ -217,6 +217,51 @@ class SQLPlanParserSuite extends BaseTestSuite {
     }
   }
 
+  test("Parse Execs within WholeStageCodeGen in Order") {
+    TrampolineUtil.withTempDir { eventLogDir =>
+      val (eventLog, _) = ToolTestUtils.generateEventLog(eventLogDir,
+        "Execs within WSCG ") { spark =>
+        import spark.implicits._
+        val df = Seq(("foo", 1L, 1.2), ("foo", 2L, 2.2), ("bar", 2L, 3.2),
+          ("bar", 2L, 4.2)).toDF("x", "y", "z")
+        df.cube($"x", ceil($"y")).count
+      }
+      val pluginTypeChecker = new PluginTypeChecker()
+      val app = createAppFromEventlog(eventLog)
+      assert(app.sqlPlans.size == 1)
+      app.sqlPlans.foreach { case (sqlID, plan) =>
+        val planInfo = SQLPlanParser.parseSQLPlan(app.appId, plan, sqlID, "",
+          pluginTypeChecker, app)
+        val allExecInfo = planInfo.execInfo
+        val expectedAllExecInfoSize = if (ToolUtils.isSpark320OrLater()) {
+          // AdaptiveSparkPlan, WholeStageCodegen, AQEShuffleRead, Exchange, WholeStageCodegen
+          5
+        } else {
+          // WholeStageCodegen, Exchange, WholeStageCodegen
+          3
+        }
+        val wholeStages = planInfo.execInfo.filter(_.exec.contains("WholeStageCodegen"))
+        assert(wholeStages.size == 2)
+        // Expanding the children of WholeStageCodegen
+        val allExecs = allExecInfo.map(x => if (x.exec.startsWith("WholeStage")) {
+          x.children.getOrElse(Seq.empty)
+        } else {
+          Seq(x)
+        }).flatten.reverse
+        val expectedOrder = if (ToolUtils.isSpark320OrLater()) {
+          // Order should be: LocalTableScan, Expand, HashAggregate, Exchange,
+          // AQEShuffleRead, HashAggregate, AdaptiveSparkPlan
+          Seq("LocalTableScan", "Expand", "HashAggregate", "Exchange", "AQEShuffleRead",
+            "HashAggregate", "AdaptiveSparkPlan")
+        } else {
+          // Order should be: LocalTableScan, Expand, HashAggregate, Exchange, HashAggregate
+          Seq("LocalTableScan", "Expand", "HashAggregate", "Exchange", "HashAggregate")
+        }
+        assert(allExecs.map(_.exec) == expectedOrder)
+      }
+    }
+  }
+
   test("HashAggregate") {
     TrampolineUtil.withTempDir { eventLogDir =>
       val (eventLog, _) = ToolTestUtils.generateEventLog(eventLogDir,