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26 Open 47 Closed
26 Open 47 Closed
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Issues list

simple_consensus_caller , how to automatically remove
#169 opened Jun 3, 2022 by jelber2
[sample] filtering to consensus sample samples
#159 opened Dec 14, 2020 by tijyojwad
@rahulmohan
[loss] focal loss throwing an error when used in place of ce loss bug Something isn't working
#158 opened Dec 11, 2020 by tijyojwad
@rahulmohan
[Encoders] Handle exception samtools mpileup output when searching for insertions in SummaryEncoder bug Something isn't working
#156 opened Dec 8, 2020 by ohadmo
@ohadmo
[I/O] KeyErrors are thrown for info columns not present in a region
#150 opened Nov 17, 2020 by edawson
1
[I/O] Update VCF -> cuDF parser with more optimized version I/O
#135 opened Oct 19, 2020 by tijyojwad
@ntadimeti
[encoder] support latest samtools mpileup for summary encoder encodings
#132 opened Oct 5, 2020 by tijyojwad
@ohadmo
[I/O] VCFReader crashes when reading from regions that are empty bug Something isn't working I/O
#129 opened Sep 29, 2020 by edawson
@tijyojwad
[visualization] ReadPileup visualizer to take encoding as input encodings
#124 opened Sep 21, 2020 by tijyojwad
@ohadmo
[I/O] HDF Data Loader not showing speedup for multi threaded I/O
#123 opened Sep 21, 2020 by tijyojwad v0.1.0-rc2
@tijyojwad
1
[samples] reduce memory consumption of consensus aummRY encoder hdf generator I/O
#117 opened Sep 8, 2020 by tijyojwad
[sdk] update VariantWorks installation to be based on conda sdk
#112 opened Aug 24, 2020 by tijyojwad
1
@ohadmo
[samples] add test data for snp trainer samples
#110 opened Aug 24, 2020 by tijyojwad
1
@ohadmo
[samples] add multi GPU support to snp caller sample samples
#108 opened Aug 24, 2020 by tijyojwad
@ohadmo
[samples] add inference sample to variant caller trainer samples
#107 opened Aug 24, 2020 by tijyojwad
@ohadmo
[summary_encoder] insertions next to deletes encodings
#104 opened Aug 11, 2020 by tijyojwad
[encoders] add ability to expose scalar features encodings
#101 opened Aug 10, 2020 by tijyojwad
@tijyojwad
[pileup_encoder] encoder layer configurability encodings enhancement New feature or request
#85 opened Jul 1, 2020 by tijyojwad
[sample_encoding] add multi sample support encodings enhancement New feature or request
#83 opened Jun 22, 2020 by tijyojwad
[data loader] add tests for data loader implementations I/O
#73 opened Jun 8, 2020 by tijyojwad v0.1.0-rc2
[logging] add logger to VariantWorks documentation Improvements or additions to documentation
#55 opened May 29, 2020 by tijyojwad v0.1.0-rc2
[docs] add type info to APIs documentation Improvements or additions to documentation
#53 opened May 28, 2020 by tijyojwad v0.1.0-rc2
[vcf_writer] add zygosity probability to INFO column enhancement New feature or request I/O
#52 opened May 28, 2020 by tijyojwad v0.1.0-rc2
@ohadmo
[confing] add configuration management for training/inference enhancement New feature or request
#33 opened May 11, 2020 by tijyojwad
[visualization] dump visualizations for least confident samples
#26 opened May 11, 2020 by tijyojwad
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