The purpose of this Matlab and R code is to analyse and visualise reflected light macro-scale and fluorescence confocal images of bacterial biofilms at various positions across a wide timeframe during conoly biofilm development.
This code requires OMERO.matlab [1] to be installed and OMERO.mtools [2] to be in your Matlab path. Connecting to an OMERO server can be done following the instructions on the OMERO MATLAB language bindings page [3]. A session object with global scope is necessary for these functions to operate.
[1] https://www.openmicroscopy.org/omero/downloads/ [2] https://github.com/mporter-gre/mtools [3] https://docs.openmicroscopy.org/omero/5.6.4/developers/Matlab.html