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# Visit https://bit.ly/cffinit to generate yours today! | ||
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cff-version: 1.2.0 | ||
title: Omero Slurm Client | ||
title: OMERO Slurm Client | ||
message: >- | ||
If you use this software, please cite it using the | ||
metadata from this file. | ||
type: software | ||
authors: | ||
- given-names: Torec | ||
- given-names: Torec Tom | ||
family-names: Luik | ||
email: [email protected] | ||
affiliation: Amsterdam UMC | ||
|
@@ -19,33 +19,43 @@ identifiers: | |
description: ZENODO DOI for all versions | ||
repository-code: 'https://github.com/NL-BioImaging/omero-slurm-client' | ||
url: 'https://nl-bioimaging.github.io/omero-slurm-client/' | ||
repository: 'https://github.com/NL-BioImaging/biomero-scripts' | ||
abstract: >- | ||
The omero_slurm_client Python package is a library that | ||
facilitates working with a Slurm cluster in the context of | ||
the Omero platform. | ||
This library is to be used within BIOMERO (an extension to | ||
OMERO), together with the BIOMERO Scripts we also provide. | ||
Together, BIOMERO allows you to run BioImage analysis | ||
workflows directly from OMERO on a Slurm cluster, through | ||
SSH. | ||
The package includes the SlurmClient class, which extends | ||
the Fabric library’s Connection class to provide SSH-based | ||
the Fabric library's Connection class to provide SSH-based | ||
connectivity and interaction with a Slurm cluster. The | ||
package enables users to submit jobs, monitor job status, | ||
retrieve job output, and perform other Slurm-related | ||
tasks. | ||
Additionally, the package offers functionality for | ||
tasks. Additionally, the package offers functionality for | ||
configuring and managing paths to Slurm data and | ||
Singularity images, as well as specific image models and | ||
their associated repositories. | ||
Overall, the omero_slurm_client package simplifies the | ||
integration of Slurm functionality within the Omero | ||
integration of Slurm functionality within the OMERO | ||
platform and provides an efficient workflow for working | ||
with Slurm clusters. | ||
keywords: | ||
- python | ||
- omero | ||
- slurm | ||
- jobs | ||
- high-performance-computing | ||
- fair | ||
- image-analysis | ||
- bioimaging | ||
- cytomine | ||
- biomero | ||
- biaflows | ||
- high-throughput-screening | ||
- high-content-screening | ||
license: Apache-2.0 |
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