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@NGSeq

NGSeq

Experimental tools for big genome data manipulation, research, and analysis.

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  1. ViraPipe ViraPipe Public

    ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data

    Java 16 13

  2. SparkBeagle SparkBeagle Public

    SparkBeagle: scalable distributed genotype imputation in the cloud

    Java 3 3

  3. PanGenSpark PanGenSpark Public

    Scalable reference genome assembly from compressed pan-genome index with Spark

    Java 2 1

  4. DHPGIndex DHPGIndex Public

    This tool is for compressing and indexing pan-genomes and genome sequence collections for scalable sequence and read alignment purposes.

    C++ 1 1

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