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Updates for batch processing #706

Merged
merged 3 commits into from
Jul 25, 2024
Merged

Updates for batch processing #706

merged 3 commits into from
Jul 25, 2024

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jhennies
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I've updated the batch processing module:

  1. save_ij_tiff instead of imsave
  2. Open the first image and resulting segmentation in the end to illustrate that the workflow was working
  3. Added the suggestion to first only build an empty analyse function and run it to make sure this works before filling in functionality
  4. Changed the variable name of the input directory outside of the function

Regarding 3., I'm not sure if this is understandable, any suggestions are welcome.

@tischi
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tischi commented Jul 25, 2024

Awesome thanks @jhennies !

@tischi tischi merged commit 3304aac into master Jul 25, 2024
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@tischi tischi deleted the batch_processing branch July 25, 2024 09:11
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2 participants