Invalid Dataset Link

[XinLi-0419]

Dear Developers,

The link of the dataset 'ovarian1200' seems to be invalid.

"The ovarian1200 dataset contains 1200 cells randomly selected from the 3114 single cell data provided by Schelker et al. (which is available from https://figshare.com/s/711d3fb2bd3288c8483)"

Is there any other way to get this dataset? Thanks a lot!

[plijnzaad]

I'm not sure where the data should be, to be honest. The exercise used a subset from the original Schelker data, which used to be in figshare, but it has gone. I have re-uploaded the complete Schelker data to doi:10.6084/m9.figshare.13614377, i.e. https://figshare.com/articles/dataset/Ovarian_data_used_in_CHETAH_paper/13614377 . This is the full set of 25462 genes x 3114 cells of types with meta.data 'celltypes'. I really don't know which 1200 cells were subsetted from this, so reproducing the exercises exactly is not possible, sorry. But I guess 1200 or 3114 cells is not even that big of a difference so I guess it could help. Cheers, Philip Lijnzaad Op ma 19 apr. 2021 om 21:34 schreef Shinlee419 ***@***.***>:

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Dear Developers, The link of the dataset 'ovarian1200' seems to be invalid. "The ovarian1200 dataset contains 1200 cells randomly selected from the 3114 single cell data provided by Schelker et al. (which is available from https://figshare.com/s/711d3fb2bd3288c8483)" Is there any other way to get this dataset? Thanks a lot! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#77>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACXFTN3BQLEBTJFRNWLCAWLTJSATPANCNFSM43GQWIEQ> .

[XinLi-0419]

Fantastic! Thanks for doing this! I will use the whole dataset instead.

[plijnzaad]

glad to be of service :-) Good luck, Philip Op di 20 apr. 2021 om 17:18 schreef Shinlee419 ***@***.***>:

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Fantastic! Thanks for doing this! I will use the whole dataset instead. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#77 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACXFTNZYD334PCPA2AVNYVLTJWLODANCNFSM43GQWIEQ> .