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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 238 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 218 108

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 206 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 303 repositories
  • fungal-trans Public

    A Snakemake workflow for fungal metatranscriptomics

    NBISweden/fungal-trans’s past year of commit activity
    Python 4 MIT 4 1 0 Updated Jan 4, 2025
  • theherdbook Public

    The Herd Book

    NBISweden/theherdbook’s past year of commit activity
    TypeScript 1 AGPL-3.0 1 30 25 Updated Jan 4, 2025
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    NBISweden/PLP_Design_Portal’s past year of commit activity
    0 0 12 0 Updated Jan 3, 2025
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 62 CC-BY-4.0 32 10 0 Updated Jan 3, 2025
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq’s past year of commit activity
    Python 7 GPL-3.0 1 0 9 Updated Dec 25, 2024
  • sda-uppmax-integration Public
    NBISweden/sda-uppmax-integration’s past year of commit activity
    Go 0 0 1 1 Updated Dec 23, 2024
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 53 19 Updated Dec 23, 2024
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 44 1 Updated Dec 23, 2024
  • predictprotein-webserver-common-backend Public

    A generic backend framwork for sequence prediction web-servers using WSDL API

    NBISweden/predictprotein-webserver-common-backend’s past year of commit activity
    Python 0 MIT 0 1 11 Updated Dec 22, 2024
  • nbis-webapp Public

    Hosting service for NBIS web applications during development

    NBISweden/nbis-webapp’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Dec 21, 2024
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