Scoary2 associates orthogenes (e.g. generated using OrthoFinder or Roary to traits. It reports a list of genes sorted by strength of association per trait. The results can be explored interactively with a simple, static HTML/JS app.
- Home
- Installation
- Usage
- Input
- Output
- Tutorial
- App
- Understanding the p values
- Usage as Python library
Please cite:
Roder, T. et al. Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes. Genome Biol 25, 93 (2024). https://doi.org/10.1186/s13059-024-03233-7
