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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.

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  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 12 2

  3. academic_tracker academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 15 6

  4. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  5. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 9 1

  6. MESSES MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python

Repositories

Showing 10 of 42 repositories
  • mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    MoseleyBioinformaticsLab/mwFileStatusWebsite’s past year of commit activity
    HTML 4 BSD-3-Clause-Clear 0 0 0 Updated Mar 16, 2025
  • mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

    MoseleyBioinformaticsLab/mwtab’s past year of commit activity
    Python 12 BSD-3-Clause-Clear 2 7 0 Updated Mar 14, 2025
  • gpu_tracker Public

    Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.

    MoseleyBioinformaticsLab/gpu_tracker’s past year of commit activity
    Python 4 1 6 0 Updated Feb 24, 2025
  • ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    MoseleyBioinformaticsLab/ICIKendallTau’s past year of commit activity
    R 6 1 6 0 Updated Jan 22, 2025
  • visualizationQualityControl Public

    Visualization methods for omics dataset quality control

    MoseleyBioinformaticsLab/visualizationQualityControl’s past year of commit activity
    R 10 5 8 0 Updated Jan 9, 2025
  • LabSystemStatus Public

    Contains files describing the current status of lab computers and services.

    MoseleyBioinformaticsLab/LabSystemStatus’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 25, 2024
  • categoryCompare2 Public

    Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

    MoseleyBioinformaticsLab/categoryCompare2’s past year of commit activity
    R 1 1 19 0 Updated Oct 31, 2024
  • ScanCentricPeakCharacterization Public

    R package for scan-centric, frequency based peak characterization of mass spectrometry

    MoseleyBioinformaticsLab/ScanCentricPeakCharacterization’s past year of commit activity
    R 0 0 13 0 Updated Oct 18, 2024
  • manuscript.ICIKendallTau Public
    MoseleyBioinformaticsLab/manuscript.ICIKendallTau’s past year of commit activity
    R 0 CC-BY-4.0 0 1 0 Updated Oct 14, 2024
  • icikt Public
    MoseleyBioinformaticsLab/icikt’s past year of commit activity
    Python 1 0 3 0 Updated Sep 10, 2024
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