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@MiraldiLab

Miraldi Research Lab

Systems Immunology at Cincinnati Children's Hospital

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  1. infTRN_lassoStARS infTRN_lassoStARS Public

    Forked from emiraldi/infTRN_lassoStARS

    Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

    Fortran

  2. ILCnetworks ILCnetworks Public

    Forked from flatironinstitute/ILCnetworks

    Gene regulatory networks for intestinal innate lymphoid cells

    Jupyter Notebook

  3. maxATAC maxATAC Public

    Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

    Python 28 10

Repositories

Showing 10 of 12 repositories
  • RapidRecall Public

    Codebase for figure generation for the human CD4+ rapid recall manuscript

    MiraldiLab/RapidRecall’s past year of commit activity
    R 0 0 0 0 Updated Mar 28, 2025
  • snakeCHIP Public Forked from tacazares/snakeCHIP

    A snakemake workflow for ChIP-seq data processing

    MiraldiLab/snakeCHIP’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 18, 2025
  • Inferelator_Julia Public
    MiraldiLab/Inferelator_Julia’s past year of commit activity
    Julia 1 2 0 0 Updated Mar 13, 2025
  • maxATAC Public

    Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

    MiraldiLab/maxATAC’s past year of commit activity
    Python 28 Apache-2.0 10 1 2 Updated Feb 28, 2025
  • JuliaInferelator_V2 Public

    Version 2 of the JuliaInferelator

    MiraldiLab/JuliaInferelator_V2’s past year of commit activity
    Julia 0 0 0 0 Updated Oct 11, 2024
  • Interactive_visualization Public

    HAE scripts codebank

    MiraldiLab/Interactive_visualization’s past year of commit activity
    R 0 0 0 0 Updated Apr 7, 2023
  • maxATAC_data Public

    This repo contains additional resources for the maxATAC Python package.

    MiraldiLab/maxATAC_data’s past year of commit activity
    Shell 4 1 1 0 Updated Nov 29, 2022
  • snakeATAC Public Forked from tacazares/snakeATAC

    A snakemake workflow to process ATAC-seq data

    MiraldiLab/snakeATAC’s past year of commit activity
    R 0 Apache-2.0 4 0 0 Updated Nov 29, 2022
  • infTRN_lassoStARS Public Forked from emiraldi/infTRN_lassoStARS

    Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

    MiraldiLab/infTRN_lassoStARS’s past year of commit activity
    Fortran 0 6 0 0 Updated May 3, 2022
  • CHEERS Public Forked from TrynkaLab/CHEERS
    MiraldiLab/CHEERS’s past year of commit activity
    Python 0 4 0 0 Updated Oct 17, 2021
View all repositories

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