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MikiasHWT/README.md

Hi, my name is Mikias ("Mik-yas").

Find me elsewhere

**My interests**
  • Machine Learning
  • Data Science
  • Cloud Computing
  • Transcriptome & Proteome Sequencing
  • Sequencing and Imaging Data
  • Flow & Mass Cytometry
  • Protocol Design & Optimization
  • Virology
  • Immunology
  • Cancer Research
  • Transgenic Mouse Models
  • Research Ethics, Safety & Regulations
  • Protein Folding
  • Computer-Aided Design
  • 3D Printing
  • Microelectronics (Arduino)
  • Microcomputers (Raspberry Pi)
  • Electroplating
  • Silicone & Resin Mold Making
  • Phone/Vehicle Repair
  • General DIY Projects
  • Cooking
  • Gardening

Projects 🐾

  • Python Repository: Lethal COVID-19 Single Nuclei RNA Sequencing
  • Characterization and validation of humanized mouse models.
  • R: Bulk RNA Sequencing Human Airway tissue data analysis
  • R: Spectral Flow Cytometry analysis across 5 mouse tissues
  • Pygame games TLR Evade
  • CAD 3D Printed microtube rack shortcut
  • SpaceX Landing Prediction Model 🚧
  • Seurat Spartial RNA sequencing data analysis
  • SeuratCite-Seq data analysis
  • Detailed silica column-based DNA, RNA and/or Protein extraction protocol
  • Python File sorter with error handling
  • Python BMI Calculator & Healh Indicator
  • Nextflow RNA Sequencing Pipeline 🚧
  • AWS EC2 Instance based RNA Seq Data Integration 🚧
  • AWS S3 Hosting Of New Portfolio Website
  • Amazon SageMaker Machine Learning Models

Work experience πŸ‘”

Job Position Company Field Work Period
Research Associate Fred Hutchinson Cancer Center Cancer Research 07-2024 β€” 10-2024
Research Technician Benaroya Research Institute Immunology Research 08-2019 β€” 07-2024
Phlebotomy Bloodworks Northwest Blood Donation Center 06-2017 β€” 08-2019
BioEthics Instructor UW GenOM, ALVA & Clean Energy STEM Summer Program 06-2016 β€” 09-2016
Undergraduate Research Human Photonics Lab Cancer Research 09-2011 β€” 03-2013
Research Intern Ed Kelly Lab UW Biochemistry & Metabolism 06-2011 β€” 09-2011

Skills πŸ› οΈ

Languages

Python | R | SQL | Bash | Powershell
English | Tigrinya | Dutch

Computational Analysis

Single Cell Data Analysis | Image Data Analysis | Machine Learning
Clustering Algorithms | Dimensionality Reduction | Statistical Modeling

Visualization and Reporting

ggplot2 | matplotlib | Seaborn | Plotly
Power BI | Tableau | Excel | Graphpad Prism

Tools and Platforms

VSCode | JupyterLab | R Studio | Linux | Git | Conda
AWS | Azure | GitHub
FlowJo | ImageJ/Fiji | DIVA | Spectroflo

Biological and Experimental Techniques

Immunology | Cancer Research | Virology | Genomics & Molecular Cell Biology
Flow Cytometry | Mass Cytometry | Confocal Microscopy
ELISA/ELISpot | Western Blot | Cell Assays | PCR/qPCR/RTqPCR
Mouse Models & Colony Management | DNA/RNA/Protein Extraction & Quantification
Single Cell Suspensions | 2D & 3D Cell Cultures

Lab Operations and Management

Safety & Regulatory Protocols | Lab Management
Mentorship & Training | Protocol Optimization

3D Printing and Design

CAD Design | FDM Printing | Resin Printing | G-code Scripting
Arduino | Raspberry PI | Circuit Design | Soldering

Ongoing Learning


Education πŸŽ“

  • Bachelor of Science, University of Washington. (2011 - 2016)
    • Molecular, Cellular & Developmental Biology
    • Mathematics minor
  • Bachelor of Arts, University of Washington. (2011 - 2016)
    • Psychology

Certifications πŸ“œ

  • IBM Data Science Certificate (2024)

Publications πŸ“š

  • Mikias H. Woldetensae, Mark R. Kirshenbaum, Greg M. Kramer, Liang Zhang, Eric J. Seibel, "Fluorescence image-guided photodynamic therapy of cancer cells using a scanning fiber endoscope," Proc. SPIE 8576, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XIII, 85760L (20 March 2013);

Achievements πŸ†

  • Benaroya Research Institute Inaugural Safety Award (2024)
  • "Honorable Mention": LSAMP 2012.
  • "Best Oral Presentation": UW GenOM, 2011.
  • 2nd Place: Northwest Association for Biomedical Research (NWABR) Student BioExpo, 2011.
    • Molecular Modeling Category. β€œThe Duo That Painted Tumors.”

Conference participation πŸ“ˆ

  • Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XIII, 2013.
  • UW Undergraduate Symposium, 2013.
  • UW Undergraduate Symposium, 2012.
  • LSAMP Conference; Oregon State University, 2012.
  • UW GenOM Symposium, 2011.
  • NWABR Student BioExpo; Bellevue, 2011.

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Pinned Loading

  1. scRNA_Lethal_Covid19_Analysis scRNA_Lethal_Covid19_Analysis Public

    Single nucleus RNA sequencing analysis of Human lung tissue from lethal Covid19 cases.

    Jupyter Notebook 1

  2. Python-Machine-Learning Python-Machine-Learning Public

    Practice applying machine learning models

    Jupyter Notebook 1

  3. Python-pygame Python-pygame Public

    practicing functions through game development

    Python 1