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Prieto_Garcia_et_al_2023

In this repository the R-Scrips and Rmarkdown reports of Prieto-Garcia et al. 2023 are provided.

R-Scripts and Rmarkdown reports have to be executed in the following order:

  • 1_modulizer_output_to_rds.R
  • 1_effect_of_USP39_KD_on_splicing.Rmd
  • 3_mergeBigWig_iCLIP.R
  • 4_get_read_support_for_A5SS_events.R
  • 2_RNAmaps_and_features.html
  • 3_generate_peptide_and_adjusted_SWISSPROT_sequences.Rmd
  • 5_adjust_IDs_for_FAS_analysis.R
  • 4_FASscore_analysis.Rmd

The rendered HTML-Reports can be accessed at https://mchicken1988.github.io/Prieto_Garcia_et_al_2023/

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