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JPBergsma/partial data #1812

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Commits on Jul 6, 2023

  1. Addded meta field to entry model

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Commits on Jul 19, 2023

  1. Added validator for meta field.

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  2. Merge branch 'master' into JPBergsma/add_metadata

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    JPBergsma committed Jul 19, 2023
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Commits on Jul 20, 2023

  1. Update pyyaml version in requirements.txt

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    JPBergsma authored Jul 20, 2023
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  2. Update requirements.txt

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    JPBergsma authored Jul 20, 2023
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  3. Update requirements.txt

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    JPBergsma authored Jul 20, 2023
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  4. Merge branch 'master' into JPBergsma/add_metadata

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  5. Remove test structures to get an idea of what triggers yaml import er… 

    …ror on github.
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  6. Readding meta field to test_good_structures.

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    JPBergsma committed Jul 20, 2023
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  7. Readding meta field to test_structures.json.

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Commits on Jul 21, 2023

  1. Added handling None for property_metadata to validator + small correc… 

    …tionds.
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    JPBergsma committed Jul 21, 2023
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  2. Added test for validator per entry meta field.

    @JPBergsma
    JPBergsma committed Jul 21, 2023
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  3. Added test for presence metadata field in test_structures.py.

    @JPBergsma
    JPBergsma committed Jul 21, 2023
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  4. Remove metadata fields when the fields that they belong to are not re… 

    …turned.
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    JPBergsma committed Jul 21, 2023
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  5. add extra test for bad prefix.

    @JPBergsma
    JPBergsma committed Jul 21, 2023
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Commits on Jul 25, 2023

  1. Merge branch 'master' into JPBergsma/add_metadata

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    JPBergsma committed Jul 25, 2023
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  2. Test if dependancy conflict causes error.

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    JPBergsma committed Jul 25, 2023
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  3. Merge branch 'master' into JPBergsma/add_metadata

    @JPBergsma
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  4. Revert "Test if dependancy conflict causes error." 

    This reverts commit 6251e48.
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  5. Revert "Revert "Test if dependancy conflict causes error."" 

    This reverts commit bf9692a.
    @JPBergsma
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  6. Merge branch 'JPBergsma/add_metadata' of https://github.com/JPBergsma… 

    …/optimade-python-tools into JPBergsma/add_metadata
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Commits on Jul 26, 2023

  1. correct version httpx.

    @JPBergsma
    JPBergsma committed Jul 26, 2023
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  2. commenting out validator to see if this resolves issue github.

    @JPBergsma
    JPBergsma committed Jul 26, 2023
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  3. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  4. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  5. Slowly reassembling validator to see if this resolves issue github.

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  6. Slowly reassembling validator to see if this resolves issue github.

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  7. Slowly reassembling validator to see if this resolves issue github.

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  8. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  9. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  10. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  11. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
    JPBergsma committed Jul 26, 2023
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  12. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  13. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  14. Slowly reassembling validator to see if this resolves issue github.

    @JPBergsma
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  15. Slowly reassembling validator to see if this resolves issue Github.

    @JPBergsma
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  16. Slowly reassembling validator to see if this resolves issue Github.

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  17. Slowly reassembling validator to see if this resolves issue Github..

    @JPBergsma
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  18. Slowly reassembling validator to see if this resolves issue Github..

    @JPBergsma
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  19. Placed yaml import in try except block.

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Commits on Aug 2, 2023

  1. Added more cases to test data and added bugfix for removing associate… 

    …d metadata when a field is excluded.
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  2. Removed seemingly unneccesary mypy ignore exception statement.

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  3. Merge branch 'master' into JPBergsma/add_metadata

    @JPBergsma
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  4. remove change in version pyyaml in requirements.txt.

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  5. correct spelling mistake

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  6. moved starts_with_supported_prefix and check_starts_with_supported_pr… 

    …efix functions to BaseresouceMapper.
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Commits on Aug 3, 2023

  1. Expanded docstring check_starts_with_supported_prefix

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  2. Expanded docstring check_starts_with_supported_prefix

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  3. Added return type for starts_with_supported_prefix and check_starts_w… 

    …ith_supported_prefix.
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  4. Added return type for starts_with_supported_prefix and check_starts_w… 

    …ith_supported_prefix.
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  5. Adjusted validators baseed on suggestion Matthew. 

    Co-authored-by: ml-evs [email protected]
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  6. small corrections validators.

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  7. small correction in removing unrequested metadata.

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  8. Added spaces before values 'exmpl_originates_from _project'.

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Commits on Aug 4, 2023

  1. First draft version of model of jsonlines response.

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Commits on Aug 8, 2023

  1. renamed files to partialdata.

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Commits on Aug 10, 2023

  1. First draft version of model of jsonlines response.

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    JPBergsma committed Aug 10, 2023
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Commits on Aug 14, 2023

  1. added metadata fields for partial data protocal to entry models.

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    JPBergsma committed Aug 14, 2023
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  2. Added descriptions for fields partial data links.

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Commits on Aug 22, 2023

  1. Storing intermediate code on the way to implement partial data to get… 

    … second opinion on behaviour mongomock vs pymogo.
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  2. Merge with master.

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Commits on Sep 4, 2023

  1. First somewhat working version of partial_data endpoint.

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Commits on Sep 5, 2023

  1. Merge branch 'master' into JPBergsma/Partial_data

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  2. Move _check_aliases to it's own subclass so it can be used for both g… 

    …ridfs and MongoDB.
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  3. Merge branch 'master' into optimade_python_tools_trajectory_0.1 

    # Conflicts:
#	README.md
#	docs/getting_started/client.md
#	docs/static/default_config.json
#	openapi/openapi.json
#	optimade/models/__init__.py
#	optimade/models/jsonapi.py
#	optimade/models/structures.py
#	optimade/server/entry_collections/entry_collections.py
#	optimade/server/mappers/__init__.py
#	optimade/server/middleware.py
#	optimade/server/routers/info.py
#	optimade/server/routers/utils.py
#	optimade/server/schemas.py
#	optimade/server/warnings.py
#	optimade/validator/config.py
#	requirements-docs.txt
#	requirements.txt
#	setup.py
#	tests/server/conftest.py
#	tests/server/test_mappers.py
#	tests/server/utils.py
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  4. Extra todo's and comments after trying to add validator for format fi… 

    …eld.
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  5. Fixed validator for format field.

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Commits on Sep 12, 2023

  1. first minimal version partial data.

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Commits on Sep 13, 2023

  1. merge with master

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  2. merge with master

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  3. update openapijson

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  4. update openapijson

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  5. update openapijson

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Commits on Sep 14, 2023

  1. changed 'regex' to 'pattern'.

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  2. Moved generate_links_partial_data function to routers/utils.py and ma… 

    …de it use the request url when no base url was defined in the configuration.
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Commits on Sep 24, 2023

  1. Expanded model partial_data.

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Commits on Sep 30, 2023

  1. use lstrip instead of manually removing / one at a time.

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Commits on Oct 2, 2023

  1. Update optimade/models/entries.py 

    update description property_metadata field

Co-authored-by: Matthew Evans <[email protected]>
    @JPBergsma @ml-evs
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  2. Update description per entry meta datafield.

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Commits on Oct 3, 2023

  1. Merge branch 'master' into JPBergsma/add_metadata

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  2. Merge branch 'master' into JPBergsma/add_metadata

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  3. update openapijson.

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  4. trying to merge with remote.

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  5. try to see if moving yaml is still necessary.

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  6. Revert "try to see if moving yaml is still necessary." 

    This reverts commit 68f14d3.
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Commits on Oct 11, 2023

  1. Added supported_prefixes field to config.py

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  2. Merge branch 'master' of https://github.com/JPBergsma/optimade-python… 

    …-tools
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  3. Merge branch 'master' into JPBergsma/add_metadata

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  4. Merged latest version metadata branch with partial data branch.

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Commits on Oct 12, 2023

  1. Add numpy to requirements.

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Commits on Oct 13, 2023

  1. Added jsonlines dependancy.

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  2. Made changes to make mypy happy.

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  3. Trying to determine why jsonlines is not impoeted properly on github.

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  4. Update requirements-client.txt (Materials-Consortia#1813) 

    removed duplicate requirement
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  5. Merge branch 'master' of https://github.com/JPBergsma/optimade-python… 

    …-tools
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    JPBergsma committed Oct 13, 2023
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  6. Merge branch 'master' into JPBergsma/add_metadata

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    JPBergsma committed Oct 13, 2023
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  7. Merge branch 'JPBergsma/add_metadata' into JPBergsma/Partial_data

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    JPBergsma committed Oct 13, 2023
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Commits on Oct 15, 2023

  1. Modernize all Python 3.8 annotations (Materials-Consortia#1815) 

    * Use Python 3.9 as the 'base' CI version for linting

* Update pre-commit hooks

* Run `pyupgrade --py39-plus` to upgrade legacy annotations

* Add `--exit-non-zero-on-fix` for ruff

Co-authored-by: Casper Welzel Andersen <[email protected]>

* Use f-string over format

Co-authored-by: Casper Welzel Andersen <[email protected]>

---------

Co-authored-by: Casper Welzel Andersen <[email protected]>
    @ml-evs @CasperWA
    ml-evs and CasperWA authored Oct 15, 2023
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Commits on Oct 17, 2023

  1. Merging with master.

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    JPBergsma committed Oct 17, 2023
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  2. merging with metadata branch

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    JPBergsma committed Oct 17, 2023
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Commits on Oct 18, 2023

  1. backporting bugfixes from of the JPBergsma/trajectory_endpoint branch.

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    JPBergsma committed Oct 18, 2023
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  2. Expanded model partial_data.

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    JPBergsma committed Oct 18, 2023
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  3. Expanded model partial_data.

    @JPBergsma
    JPBergsma committed Oct 18, 2023
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Commits on Oct 19, 2023

  1. Clarified why field is named describedby and not described_by.

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    JPBergsma committed Oct 19, 2023
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  2. Removed unneccesary empty line

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    JPBergsma committed Oct 19, 2023
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  3. Somehow the line setting the filepointer to 0 has gone missing.

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    JPBergsma committed Oct 19, 2023
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  4. Skip partial_data tests for elastic search for which it has not been … 

    …implemented yet.
    @JPBergsma
    JPBergsma committed Oct 19, 2023
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