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diff --git a/.nojekyll b/.nojekyll
diff --git a/README.md b/README.md
diff --git a/Readings/Abbott_1999.pdf b/Readings/Abbott_1999.pdf
diff --git a/Readings/Brain 2025 - A Scientific Vision.pdf b/Readings/Brain 2025 - A Scientific Vision.pdf
diff --git a/Readings/Button - Power failure.pdf b/Readings/Button - Power failure.pdf
diff --git a/Readings/Buzsaki_rhythms_epiphenomenon.pdf b/Readings/Buzsaki_rhythms_epiphenomenon.pdf
diff --git a/Readings/Churchland and Abbott - Conceptual and technical advances.pdf b/Readings/Churchland and Abbott - Conceptual and technical advances.pdf
diff --git a/Readings/Cohen_Chapter_25.pdf b/Readings/Cohen_Chapter_25.pdf
diff --git a/Readings/Cohen_Chapter_26.pdf b/Readings/Cohen_Chapter_26.pdf
diff --git a/Readings/Gerstner_2012.pdf b/Readings/Gerstner_2012.pdf
diff --git a/Readings/Goldman_Fee_2017.pdf b/Readings/Goldman_Fee_2017.pdf
diff --git a/Readings/Hodgkin-Huxley_Cheat_Sheet.pdf b/Readings/Hodgkin-Huxley_Cheat_Sheet.pdf
diff --git a/Readings/Hodgkin_Huxley_1952.pdf b/Readings/Hodgkin_Huxley_1952.pdf
diff --git a/Readings/Hyafil_TINS_2015.pdf b/Readings/Hyafil_TINS_2015.pdf
diff --git a/Readings/Izhikevich_Chapter_2.pdf b/Readings/Izhikevich_Chapter_2.pdf
diff --git a/Readings/Izhikevich_Chapter_8.pdf b/Readings/Izhikevich_Chapter_8.pdf
diff --git a/Readings/Jones_2016.pdf b/Readings/Jones_2016.pdf
diff --git a/Readings/Koch_Chapter_1.pdf b/Readings/Koch_Chapter_1.pdf
diff --git a/Readings/Koch_Chapter_6.pdf b/Readings/Koch_Chapter_6.pdf
diff --git a/Readings/Kramer_Eden_2010.pdf b/Readings/Kramer_Eden_2010.pdf
diff --git a/Readings/Kramer_Eden_Chapter_11.pdf b/Readings/Kramer_Eden_Chapter_11.pdf
diff --git a/Readings/Kramer_Eden_Chapter_2.pdf b/Readings/Kramer_Eden_Chapter_2.pdf
diff --git a/Readings/Kramer_Eden_Chapter_3.pdf b/Readings/Kramer_Eden_Chapter_3.pdf
diff --git a/Readings/Kramer_Eden_Chapter_4.pdf b/Readings/Kramer_Eden_Chapter_4.pdf
diff --git a/Readings/Kramer_Eden_Chapter_5.pdf b/Readings/Kramer_Eden_Chapter_5.pdf
diff --git a/Readings/Kramer_Eden_Chapter_8.pdf b/Readings/Kramer_Eden_Chapter_8.pdf
diff --git a/Readings/Kramer_SFN_Short_Course.pdf b/Readings/Kramer_SFN_Short_Course.pdf
diff --git a/Readings/Kramer_Slides_SAMSI_Lecture_1.pdf b/Readings/Kramer_Slides_SAMSI_Lecture_1.pdf
diff --git a/Readings/Kramer_Slides_SAMSI_Lecture_2.pdf b/Readings/Kramer_Slides_SAMSI_Lecture_2.pdf
diff --git a/Readings/Lepage_Neural_Comp_2011.pdf b/Readings/Lepage_Neural_Comp_2011.pdf
diff --git a/Readings/MA666_Backpropagation.pdf b/Readings/MA666_Backpropagation.pdf
diff --git a/Readings/MA666_Neural_Networks_and_Learning.pdf b/Readings/MA666_Neural_Networks_and_Learning.pdf
diff --git a/Readings/Mainen_1995.pdf b/Readings/Mainen_1995.pdf
diff --git a/Readings/Marder_2015.pdf b/Readings/Marder_2015.pdf
diff --git a/Readings/Pesaran_2018.pdf b/Readings/Pesaran_2018.pdf
diff --git a/Readings/Ray_Maunsell_2015.pdf b/Readings/Ray_Maunsell_2015.pdf
diff --git a/Readings/Riquelme_2021.pdf b/Readings/Riquelme_2021.pdf
diff --git a/Readings/Saving Science - The New Atlantis.pdf b/Readings/Saving Science - The New Atlantis.pdf
diff --git a/Readings/Tort_J_Neurophysiol_2010.pdf b/Readings/Tort_J_Neurophysiol_2010.pdf
diff --git a/Readings/Wilson_2017.pdf b/Readings/Wilson_2017.pdf
diff --git a/Syllabus/MA665_MA666_Syllabus.docx b/Syllabus/MA665_MA666_Syllabus.docx
diff --git a/Topic-1 Introduction/README.md b/Topic-1 Introduction/README.md
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-10-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-10-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-11-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-11-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-12-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-12-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-13-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-13-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-15-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-15-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-16-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-16-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-8-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-8-output-1.png
diff --git a/Topic-2 I&F/IF_files/figure-html/cell-9-output-1.png b/Topic-2 I&F/IF_files/figure-html/cell-9-output-1.png
diff --git a/Topic-2 I&F/IF_files/libs/bootstrap/bootstrap.min.css b/Topic-2 I&F/IF_files/libs/bootstrap/bootstrap.min.css
diff --git a/Topic-2 I&F/README.md b/Topic-2 I&F/README.md
diff --git a/main/.nojekyll b/main/.nojekyll
diff --git a/Topic-2 I&F/IF.ipynb → main/IF.ipynb b/Topic-2 I&F/IF.ipynb → main/IF.ipynb
@@ -5,20 +5,24 @@
    "metadata": {},
    "source": [
     "---\n",
-    "title: \"Integrate and Fire\"\n",
-    "format:\n",
-    "  html:\n",
-    "    code-fold: true\n",
-    "    code-tools: true\n",
-    "jupyter: python 3\n",
-    "number-sections: true\n",
+    "project:\n",
+    "  type: website\n",
+    "  output-dir: docs\n",
     "---"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "\n",
+    "format:\n",
+    "  html:\n",
+    "    code-fold: true\n",
+    "    code-tools: true\n",
+    "jupyter: python 3\n",
+    "number-sections: true\n",
+    "\n",
     "In this notebook we will use Python to simulate the integrate and fire (I&F) neuron model.  We'll investigate, in particular, how the spiking activity varies as we adjust the input current $I$."
    ]
   },

diff --git a/main/_quarto.yml b/main/_quarto.yml
@@ -0,0 +1,19 @@
+project:
+  type: website
+
+website:
+  title: "BU MA665 MA666"
+  navbar:
+    left:
+      - href: index.qmd
+        text: Home
+      - about.qmd
+
+format:
+  html:
+    theme: cosmo
+    css: styles.css
+    toc: true
+
+
+