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replace imp with importlib #59

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replace imp with importlib #59

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6 changes: 4 additions & 2 deletions HD_BET/run.py
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
import SimpleITK as sitk
from HD_BET.data_loading import load_and_preprocess, save_segmentation_nifti
from HD_BET.predict_case import predict_case_3D_net
import imp
import importlib.util
from HD_BET.utils import postprocess_prediction, SetNetworkToVal, get_params_fname, maybe_download_parameters
import os
import HD_BET
Expand Down Expand Up @@ -53,7 +53,9 @@ def run_hd_bet(mri_fnames, output_fnames, mode="accurate", config_file=os.path.j

assert all([os.path.isfile(i) for i in list_of_param_files]), "Could not find parameter files"

cf = imp.load_source('cf', config_file)
spec = importlib.util.spec_from_file_location("cf", config_file)
cf = importlib.util.module_from_spec(spec)
spec.loader.exec_module(cf)
cf = cf.config()

net, _ = cf.get_network(cf.val_use_train_mode, None)
Expand Down