SGN fates paper code reproducibility

Required packages

Using conda environment, the following code should be run:

conda create -n sgnfates -c conda-forge -c r python=3.8 r-mgcv rpy2 -y
conda activate sgnfates
pip install scFates==0.4.0 harmonyTS scanpy==1.9.1 leidenalg==0.8.2
pip install git+https://github.com/LouisFaure/anndata2pagoda