GitHub - LiSu935/geneformer_learning: running geneformer

Name		Name	Last commit message	Last commit date
Latest commit History 47 Commits
.ipynb_checkpoints		.ipynb_checkpoints
BenchmarkETC		BenchmarkETC
__MACOSX		__MACOSX
Trainer_for_weighted_loss.py		Trainer_for_weighted_loss.py
comparing_raw_norm.ipynb		comparing_raw_norm.ipynb
compute_matrix_custom_trainer_1027.txt		compute_matrix_custom_trainer_1027.txt
final_finetuned_model_final.ipynb		final_finetuned_model_final.ipynb
fine_tuning-Copy1.ipynb		fine_tuning-Copy1.ipynb
fine_tuning-version2.ipynb		fine_tuning-version2.ipynb
fine_tuning.ipynb		fine_tuning.ipynb
output_geneSymbol_list.py		output_geneSymbol_list.py
plot_emb_matrics.py		plot_emb_matrics.py
rawcounts_data_prep.R		rawcounts_data_prep.R
run_fine_tuning_ms.py		run_fine_tuning_ms.py
run_geneformer.py		run_geneformer.py
run_geneformer_TK_embex.py		run_geneformer_TK_embex.py
run_geneformer_fromNormalized.py		run_geneformer_fromNormalized.py
run_geneformer_nsclc_full.py		run_geneformer_nsclc_full.py
run_geneformer_test.py		run_geneformer_test.py
symbol_list_2_IDmapping_table.R		symbol_list_2_IDmapping_table.R
weighted_loss.py		weighted_loss.py