Fijarczyk2020_JeanTalon

Custom code for the paper about Jean-Talon beer strain The genome sequence of the Jean-Talon strain, an archeological tetraploid beer yeast from Québec

01_ploidy_spore_viability_aneuploidies

Code and input files for plotting Figure 1: results of ploidy estimation, spore viability, large copy number variants and aneuploidies

02_PCA_with_2_cerevisiae_datasets

Code for running PCA on two datasets of S. cerevisiae with Jean-Talon (Figure 2)

03_relatedness_to_beer_strains

Code for analysing relatedness of the Jean-Talon strain to other beer strains (Figure 3)

04_copy_number_variation

Code for analysing copy number variation (CNVs) (Figure 4 & Figure S3)

05_cobalt_resistance

Code for analysing growth curves and plotting growth in different cobalt concentrations (Figure 4)

06_structural_variants

Code for analysing structural variation with long reads (Figure 5 & Figures S4-S6)

07_draft_assemblies

Code for analysing translocation using draft assemblies