Scripts for the paper on spurious tyrosine phosphorylation in yeast (Bradley et al., 2023). All of the code is written in R in the R markdown (.Rmd) format. The repository is divided into the following four directories:
- Structure: Figure 2 and associated analyses
- Fitnesss: Figure 3 and associated analyses
- Evolution_yeast_human: Figure 4 and associated analyses (the extent to which native pY in human overlaps with spurious pY in yeast)
- Counter_selection: Figure 5 and associated analyses (whether spurious pY sites are counter-selected in species that have tyrosine kinases)
Scripts for the Figure 1 analysis (MS/MS data analysis) are publicly available under: https://gitlab.com/public_villenlab/spurious-phosphorylation