v0.3.0

FBCModelTests v0.3.0

Diff since v0.2.5

Closed issues:

• Make a commandline tool that simplifies generating the FROG reports. (#21)
• Metabolite duplication is too sensitive (#77)

Merged pull requests:

• allow "evaluated" explanations in @atest (#75) (@exaexa)
• Small cosmetic fixes for Memote.jl (#76) (@stelmo)
• CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#80) (@github-actions[bot])

v0.2.5

FBCModelTests v0.2.5

Diff since v0.2.4

Closed issues:

• Change default ignored_reactions to use SBO terms (#10)
• Improve heuristic identification of transport reactions (#32)
• Investigate problem with reaction annotation regexes (#40)
• Group FVA in tests (#52)

Merged pull requests:

• FROG: put report files into a separate OMEX subdir (#69) (@exaexa)
• Improve memote.jl (#70) (@stelmo)
• Improve to readme for the MEMOTE additions (#71) (@stelmo)
• clean up gitignore (#72) (@exaexa)
• Make test output neater (#73) (@exaexa)
• Truncate memote test output (#74) (@stelmo)

v0.2.4

FBCModelTests v0.2.4

Diff since v0.2.3

Merged pull requests:

• Improve the comparison tooling (#68) (@exaexa)

v0.2.3

FBCModelTests v0.2.3

Diff since v0.2.2

Closed issues:

• use Base.@kwdef for setting up defaults for constant-holding structures (#51)

Merged pull requests:

• Add @kwdef to constructors (#64) (@stelmo)
• implement a small OMEX packer (#65) (@exaexa)
• finally fix the flux-in-variability check (#66) (@exaexa)

v0.2.2

FBCModelTests v0.2.2

Diff since v0.2.1

Merged pull requests:

• Fix flux column in 02_fva.tsv (#63) (@exaexa)

v0.2.1

FBCModelTests v0.2.1

Diff since v0.2.0

Merged pull requests:

• update the frog report format to 0.1.2 (#62) (@exaexa)

v0.2.0

FBCModelTests v0.2.0

Diff since v0.1.0

Closed issues:

• Add additional tests (#38)

Merged pull requests:

• added memote consistency tests (#50) (@Fl-Sch)
• some frontend improvements (#53) (@exaexa)
• Extend memote tests to include purposefully broken (or fixed) models (#54) (@stelmo)
• fix output of empty tables in FROG (#55) (@exaexa)
• Sync FROG output with the latest spec, support solver modifications (#56) (@exaexa)
• include ccov badge (#57) (@exaexa)
• frog: standardize the tolerance computation (#58) (@exaexa)
• do not throw on loading less-than-fatally-broken SBML (#59) (@exaexa)

v0.1.0

FBCModelTests v0.1.0

Closed issues:

• Implement all memote-style tests (#23)
• Organize tests into modules to make finding them easier from the repl (#39)
• verify SHA of all downloaded test files (#42)

Merged pull requests:

• Ignore vscode (#1) (@stelmo)
• Check if model is mass and charge balanced (#2) (@stelmo)
• add compathelper and formattercmd (#3) (@exaexa)
• add CI (#4) (@exaexa)
• CompatHelper: add new compat entry for DocStringExtensions at version 0.9, (keep existing compat) (#5) (@github-actions[bot])
• CompatHelper: add new compat entry for JSON at version 0.21, (keep existing compat) (#6) (@github-actions[bot])
• CompatHelper: add new compat entry for COBREXA at version 1, (keep existing compat) (#7) (@github-actions[bot])
• CompatHelper: add new compat entry for MD5 at version 0.2, (keep existing compat) (#8) (@github-actions[bot])
• add docs (skeleton) (#9) (@exaexa)
• Add test for erroneous energy generating cycles (#11) (@stelmo)
• Implement basic consistency test (#13) (@stelmo)
• CompatHelper: add new compat entry for JuMP at version 1, (keep existing compat) (#14) (@github-actions[bot])
• Added metabolite annotation tests and a test set for control (#15) (@vm-vh)
• Added gene annotation tests and a test set for control (#16) (@Fl-Sch)
• FROG finalization (#17) (@exaexa)
• CompatHelper: add new compat entry for SBML at version 1, (keep existing compat) (#18) (@github-actions[bot])
• Add more metabolic model tests (#19) (@stelmo)
• Add readme to make the package lookable (#20) (@exaexa)
• build docker containers (#22) (@exaexa)
• include memote stuff in docs (#24) (@exaexa)
• Add tests for GPRs (#25) (@stelmo)
• Biomass tests (#28) (@stelmo)
• move Vincent to the correct spot :] (#29) (@exaexa)
• Add network tests (#30) (@stelmo)
• turn off tests against julia-nightly (#31) (@exaexa)
• Add reaction annotation tests (#33) (@vm-vh)
• Reaction information tests (#34) (@stelmo)
• CompatHelper: add new compat entry for PeriodicTable at version 1, (keep existing compat) (#35) (@github-actions[bot])
• improve the no-op report from autoformatter (#36) (@exaexa)
• Add memote test suite (#37) (@stelmo)
• frog modularization & testing (#43) (@exaexa)
• Reorganize the memote tests (#44) (@stelmo)
• add tagbot action (#45) (@exaexa)
• add julia compat (#46) (@exaexa)