parts #114
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| name: Build and Package | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| arch: amd64 | |
| - os: ubuntu-latest | |
| arch: arm64 | |
| - os: macos-latest # This will be ARM64 | |
| arch: arm64 | |
| - os: macos-13 # This will be AMD64 | |
| arch: amd64 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Go | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: '1.22' | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel cffi packaging | |
| - name: Install Zig | |
| uses: goto-bus-stop/setup-zig@v2 | |
| with: | |
| version: 0.11.0 | |
| - name: Set up Xcode | |
| if: runner.os == 'macOS' | |
| uses: maxim-lobanov/setup-xcode@v1 | |
| with: | |
| xcode-version: latest-stable | |
| - name: Build Go shared library | |
| working-directory: ./py | |
| run: | | |
| if [ "${{ runner.os }}" = "Linux" ] && [ "${{ matrix.arch }}" = "arm64" ]; then | |
| CC="zig cc -target aarch64-linux-gnu" CGO_ENABLED=1 GOOS=linux GOARCH=arm64 go build -o dnadesign/libdnadesign.so -buildmode=c-shared lib.go | |
| elif [ "${{ runner.os }}" = "Linux" ] && [ "${{ matrix.arch }}" = "amd64" ]; then | |
| CC="zig cc -target x86_64-linux-gnu" CGO_ENABLED=1 GOOS=linux GOARCH=amd64 go build -o dnadesign/libdnadesign.so -buildmode=c-shared lib.go | |
| elif [ "${{ runner.os }}" = "macOS" ] && [ "${{ matrix.arch }}" = "arm64" ]; then | |
| CGO_ENABLED=1 GOOS=darwin GOARCH=arm64 go build -o dnadesign/libdnadesign.dylib -buildmode=c-shared lib.go | |
| elif [ "${{ runner.os }}" = "macOS" ] && [ "${{ matrix.arch }}" = "amd64" ]; then | |
| CGO_ENABLED=1 GOOS=darwin GOARCH=amd64 go build -o dnadesign/libdnadesign.dylib -buildmode=c-shared lib.go | |
| fi | |
| env: | |
| CGO_ENABLED: 1 | |
| - name: List directory contents | |
| working-directory: ./py/dnadesign | |
| run: ls -l | |
| - name: Build wheel | |
| working-directory: ./py | |
| run: | | |
| pip install wheel packaging | |
| if [ "${{ runner.os }}" = "Linux" ] && [ "${{ matrix.arch }}" = "amd64" ]; then | |
| python setup.py bdist_wheel --plat-name manylinux2014_x86_64 | |
| elif [ "${{ runner.os }}" = "Linux" ] && [ "${{ matrix.arch }}" = "arm64" ]; then | |
| python setup.py bdist_wheel --plat-name manylinux2014_aarch64 | |
| elif [ "${{ runner.os }}" = "macOS" ] && [ "${{ matrix.arch }}" = "amd64" ]; then | |
| python setup.py bdist_wheel --plat-name macosx_10_9_x86_64 | |
| elif [ "${{ runner.os }}" = "macOS" ] && [ "${{ matrix.arch }}" = "arm64" ]; then | |
| python setup.py bdist_wheel --plat-name macosx_11_0_arm64 | |
| elif [ "${{ runner.os }}" = "Windows" ]; then | |
| python setup.py bdist_wheel --plat-name win_amd64 | |
| else | |
| python setup.py bdist_wheel | |
| fi | |
| - name: Test wheel in fresh environment | |
| run: | | |
| python -m venv test_env | |
| source test_env/bin/activate | |
| pip install ./py/dist/*.whl | |
| python -c "from dnadesign import parsers; print('Library loaded successfully')" | |
| pip install pytest | |
| pytest ./py/tests -v --capture=no | |
| continue-on-error: true | |
| - name: Debug segmentation fault (macOS) | |
| if: failure() && runner.os == 'macOS' | |
| run: | | |
| lldb -o "run" -o "bt all" -o "quit" -- python -m pytest ./py/tests -v | |
| - name: Debug segmentation fault (Linux) | |
| if: failure() && runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y gdb | |
| gdb -ex "run" -ex "bt full" -ex "quit" --args python -m pytest ./py/tests -v | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: dist-${{ runner.os }}-${{ matrix.arch }} | |
| path: py/dist/ | |
| publish: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install twine | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v2 | |
| with: | |
| path: dist | |
| - name: List directory structure | |
| run: find dist -type f | |
| - name: Check version and publish to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| # Get the version from the wheel file name | |
| WHEEL_FILE=$(find dist -name "*.whl" | head -n 1) | |
| VERSION=$(echo $WHEEL_FILE | sed -E 's/.*dnadesign-([0-9]+\.[0-9]+\.[0-9]+).*/\1/') | |
| echo "Package version: $VERSION" | |
| # Check if the version exists on PyPI | |
| if ! pip index versions dnadesign | grep -q "$VERSION"; then | |
| echo "Version $VERSION not found on PyPI. Uploading..." | |
| twine upload dist/**/*.whl | |
| else | |
| echo "Version $VERSION already exists on PyPI. Skipping upload." | |
| fi |