docker-isis3

Docker container for USGS's Integrated Software for Imagers and Spectrometers version 3 (ISIS3). Singularity file is also offered which bootstraps the Docker image.

Usage

$ISIS3DATA is set to /isis3data. By default, the directory is empty, you must mount the data download onto the image from the host along with your work area so you can pass them into ISIS applications and have persistent output.

# create ISIS instance
[user@computer]$ docker run -dt -v /path/to/data:/isis3data -v /workarea --name isis3 kelvinrr/isis3

# do things
[user@computer]$ docker exec isis3 stats from=/workarea/MarsPlanetaryRadius_45bottom.cub
Group = Results
  From                    = /isis3data/data/base/testData/MarsPlanetaryRadius-
                            _45bottom.cub
  Band                    = 1
  Average                 = 3388394.0
  StandardDeviation       = 6844.4887355016
  Variance                = 46847026.050409
  Median                  = 3388394.1808194
  Mode                    = 3376544.0
  Skew                    = -7.92547477633476e-05
  Minimum                 = 3376544.0
  Maximum                 = 3400244.0
  Sum                     = 1.9048334634554e+13
  TotalPixels             = 5621641
  ValidPixels             = 5621641
  OverValidMaximumPixels  = 0
  UnderValidMinimumPixels = 0
  NullPixels              = 0
  LisPixels               = 0
  LrsPixels               = 0
  HisPixels               = 0
  HrsPixels               = 0

Singularity

[user@computer]$ singularity pull --name isis3.img shub://Kelvinrr/docker-isis3
Progress |===================================| 100.0%
Done. Container is at: /home/vagrant/isis3.simg
[user@computer]$ singularity exec --bind path/to/data:/isis3data isis3.simg stats from=/isis3data/data/base/testData/MarsPlanetaryRadius_45bottom.cub
Group = Results
  From                    = /isis3data/data/base/testData/MarsPlanetaryRadius-
                            _45bottom.cub
  Band                    = 1
  Average                 = 3388394.0
  StandardDeviation       = 6844.4887355016
  Variance                = 46847026.050409
  Median                  = 3388394.1808194
  Mode                    = 3376544.0
  Skew                    = -7.92547477633476e-05
  Minimum                 = 3376544.0
  Maximum                 = 3400244.0
  Sum                     = 1.9048334634554e+13
  TotalPixels             = 5621641
  ValidPixels             = 5621641
  OverValidMaximumPixels  = 0
  UnderValidMinimumPixels = 0
  NullPixels              = 0
  LisPixels               = 0
  LrsPixels               = 0
  HisPixels               = 0
  HrsPixels               = 0