Using new CoupledSDEs

Project.toml

@@ -45,7 +45,7 @@ Dierckx = "0.5.3"
 DiffEqNoiseProcess = "5.22"
 DocStringExtensions = "0.9.3"
 Documenter = "^1.4.1"
-DynamicalSystemsBase = "3.7.1"
+DynamicalSystemsBase = "3.11.1"
 ExplicitImports = "1.9"
 Format = "1"
 ForwardDiff = "0.10.36"

src/CriticalTransitions.jl

@@ -2,16 +2,10 @@ module CriticalTransitions
 
 # Base
 using Statistics: Statistics, mean
-using LinearAlgebra: LinearAlgebra, Diagonal, I, norm, tr, dot
+using LinearAlgebra: LinearAlgebra, I, norm, dot, tr
 using StaticArrays: StaticArrays, SVector
 
-# core
-using DynamicalSystemsBase:
-    DynamicalSystemsBase,
-    ContinuousTimeDynamicalSystem,
-    StateSpaceSets,
-    dimension,
-    dynamic_rule
+# Core
 using DiffEqNoiseProcess: DiffEqNoiseProcess
 using OrdinaryDiffEq: OrdinaryDiffEq, Tsit5
 using StochasticDiffEq:
@@ -25,6 +19,19 @@ using StochasticDiffEq:
     step!,
     terminate!,
     u_modified!
+using DynamicalSystemsBase:
+    DynamicalSystemsBase,
+    #ContinuousTimeDynamicalSystem,
+    # CoupledODEs,
+    CoupledSDEs,
+    #StateSpaceSets,
+    #dimension,
+    dynamic_rule,
+    current_state,
+    set_state!
+
+#StochasticSystemsBase = Base.get_extension(DynamicalSystemsBase, :StochasticSystemsBase)
+#using DynamicalSystemsBase.StochasticSystemsBase: CoupledSDEs
 
 using ForwardDiff: ForwardDiff
 using IntervalArithmetic: IntervalArithmetic, interval
@@ -51,8 +58,7 @@ using Reexport: @reexport
 
 include("extention_functions.jl")
 include("utils.jl")
-include("CoupledSDEs.jl")
-include("CoupledSDEs_utils.jl")
+include("system_utils.jl")
 include("io.jl")
 include("trajectories/simulation.jl")
 include("trajectories/transition.jl")
@@ -67,13 +73,9 @@ using .CTLibrary
 
 # Core types
 export CoupledSDEs,
-    idfunc!,
-    idfunc,
-    add_noise_strength,
     noise_process,
     covariance_matrix,
-    noise_strength,
-    CoupledODEs
+    diffusion_matrix
 
 # Methods
 export equilib, basins, basinboundary, basboundary
@@ -82,6 +84,7 @@ export transition, transitions
 export fw_action, om_action, action, geometric_action
 export min_action_method, geometric_min_action_method
 export make_jld2, make_h5, intervals_to_box
+export covariance_matrix, diffusion_matrix
 # export basins, basinboundary
 # export edgetracking, bisect_to_edge, AttractorsViaProximity
 # export fixedpoints