Merge pull request #118 from JuliaDynamics/run-formatter

JuliaDynamics · Oct 12, 2024 · a507ddc · a507ddc
2 parents 9151cae + 63b9f82
commit a507ddc
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Showing 7 changed files with 16 additions and 11 deletions.
diff --git a/docs/make.jl b/docs/make.jl
@@ -47,7 +47,7 @@ makedocs(;
         Base.get_extension(CriticalTransitions, :ChaosToolsExt),
         Base.get_extension(CriticalTransitions, :CoupledSDEsBaisin),
         DynamicalSystemsBase,
-        Base.get_extension(DynamicalSystemsBase, :StochasticSystemsBase)
+        Base.get_extension(DynamicalSystemsBase, :StochasticSystemsBase),
     ],
     doctest=false,
     format=Documenter.HTML(; html_options...),
@@ -56,4 +56,4 @@ makedocs(;
     plugins=[bib, links],
 )
 
-deploydocs(; repo="github.com/JuliaDynamics/CriticalTransitions.jl.git", push_preview=false)
+deploydocs(; repo="github.com/JuliaDynamics/CriticalTransitions.jl.git", push_preview=false)
diff --git a/src/CriticalTransitions.jl b/src/CriticalTransitions.jl
@@ -20,8 +20,13 @@ using StochasticDiffEq:
     terminate!,
     u_modified!
 using DynamicalSystemsBase:
-    DynamicalSystemsBase, CoupledSDEs, CoupledODEs,
-    dynamic_rule, current_state, set_state!, trajectory
+    DynamicalSystemsBase,
+    CoupledSDEs,
+    CoupledODEs,
+    dynamic_rule,
+    current_state,
+    set_state!,
+    trajectory
 
 using ForwardDiff: ForwardDiff
 using IntervalArithmetic: IntervalArithmetic, interval

diff --git a/src/trajectories/transition.jl b/src/trajectories/transition.jl
@@ -55,7 +55,7 @@ function transition(
     condition(u, t, integrator) = subnorm(u - x_f; directions=rad_dims) < rad_f
     affect!(integrator) = terminate!(integrator)
     cb_ball = DiscreteCallback(condition, affect!)
-    
+
     prob = remake(sys.integ.sol.prob; u0=x_i, tspan=(0, tmax))
     sim = solve(prob, sys.integ.alg; callback=cb_ball, kwargs...)
     success = sim.retcode == SciMLBase.ReturnCode.Terminated

diff --git a/src/utils.jl b/src/utils.jl
@@ -113,7 +113,7 @@ Normalizes the covariance matrix ``Q`` (in-place) by dividing it by
 function normalize_covariance!(covariance)
     l1norm = norm(covariance, 1)
     dim = size(covariance)[1]
-    return covariance * dim/l1norm
+    return covariance * dim / l1norm
 end
 
 # Central finite difference, second derivative

diff --git a/test/largedeviations/action_fhn.jl b/test/largedeviations/action_fhn.jl
@@ -48,4 +48,4 @@ end
 @testset "div_drift" begin
     @test CT.div_drift(sys, zeros(2)) == -2.0
     @test CT.div_drift(sys, x_i) == -4.0
-end
+end
diff --git a/test/runtests.jl b/test/runtests.jl
@@ -64,7 +64,7 @@ end
 
 @testset "Trajectories" begin
     include("trajectories/simulate.jl")
-#   include("trajectories/transition.jl")
+    #   include("trajectories/transition.jl")
 end
 
 @testset "Extentions" begin

diff --git a/test/trajectories/simulate.jl b/test/trajectories/simulate.jl
@@ -6,8 +6,8 @@
     sys = CoupledSDEs(fitzhugh_nagumo, init, p; noise_strength=σ)
     traj = trajectory(sys, 10, init)
     relax = deterministic_orbit(sys, 10, init)
-    
-    @test traj[1][1,1] == 1.0
-    @test isapprox(relax[1][end,1], 0.816; atol=1e-2)
+
+    @test traj[1][1, 1] == 1.0
+    @test isapprox(relax[1][end, 1], 0.816; atol=1e-2)
     # These tests could be improved - Reyk
 end