Add GDA command #19
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Add GDA command #19
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Overview
This PR adds a command that downloads and preprocesses the GDA corpus,
seq2rel-ds preprocess gda. The GDA corpus is contains gene-disease associations and was created with distant supervision (see here for more information).Other changes
sort_entstoparse_pubtatorthat sorts entities according to their order of first appearance. This is important for methods like ours, which use traditional, order-sensitive loss functions.query_pubtatorandparse_pubtatorare now passed as**kwargs.TODO
parse_pubtatorto include all of the edge cases, as well as all of the parameters to the function. Tracking in Add tests for parse_pubtator #18.