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Add tests for parse_pubtator #18

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JohnGiorgi opened this issue May 2, 2021 · 0 comments
Open
2 of 3 tasks

Add tests for parse_pubtator #18

JohnGiorgi opened this issue May 2, 2021 · 0 comments
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enhancement New feature or request

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JohnGiorgi commented May 2, 2021 •
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There are a couple of strange formatting choices used in certain corpora that are in the pubtator format (or a pubtator like format). Examples include:

  • In BC5CDR, there are compound entities, separated by "|"
  • In GDA, some abstracts are actually titles only.
  • Test sort_ents

It would be great to add individual unit tests for each of these cases (and any other we discover) to ensure that we are handling them properly.
@JohnGiorgi JohnGiorgi added the enhancement New feature or request label May 2, 2021
@JohnGiorgi JohnGiorgi self-assigned this May 2, 2021
@JohnGiorgi JohnGiorgi mentioned this issue May 2, 2021
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