[ci] remove libatlas from install; reorder #4
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name: Test | |
on: | |
push: | |
pull_request: | |
schedule: | |
- cron: '42 4 5,20 * *' | |
jobs: | |
Test: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
#python-version: [3.8, 3.9, '3.10', 3] | |
python-version: [3] | |
#MPI: ['mpich', 'openmpi', 'no'] | |
MPI: ['no'] | |
defaults: | |
run: | |
# this is needed, because otherwise conda env is not available | |
shell: bash -l {0} | |
steps: | |
- name: Install build dependencies | |
run: | | |
sudo apt-get update && sudo apt-get -y --no-install-recommends install -y -qq libblas{3,-dev} liblapack{3,-dev} libatlas-base-dev cmake build-essential git gfortran | |
- name: Install openmpi | |
if: ${{ matrix.MPI == 'openmpi' }} | |
run: | | |
sudo apt-get install -qq openmpi-bin libopenmpi-dev python-mpi4py; | |
update-alternatives --list mpi|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpi; | |
update-alternatives --list mpirun|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpirun; | |
- name: Install mpich | |
if: ${{ matrix.MPI == 'mpich' }} | |
run: | | |
sudo apt-get install -qq mpich libmpich-dev python-mpi4py; | |
update-alternatives --list mpi|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpi; | |
update-alternatives --list mpirun|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpirun; | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: false | |
channels: conda-forge | |
python-version: ${{ matrix.python-version }} | |
mamba-version: "*" | |
- name: Install python dependencies | |
run: | | |
mamba install --quiet --file conda-requirements.txt corner | |
pip install --user coveralls | |
conda list | |
conda info -a | |
- name: No-MPI case | |
if: ${{ matrix.MPI == 'no' }} | |
run: | | |
pip install --user mpi4py | |
- name: Install MultiNest | |
run: | | |
git clone --branch ${MULTINEST_TAG} https://github.com/JohannesBuchner/MultiNest | |
mkdir -p MultiNest/build; pushd MultiNest/build; cmake .. && make && popd | |
test -e MultiNest/lib/libmultinest.so | |
- name: Install PyMultiNest | |
run: | | |
python setup.py install --user | |
python -c 'import pymultinest'|grep 'LD_LIBRARY_PATH' | |
- name: Install Cuba | |
run: | | |
git clone https://github.com/JohannesBuchner/cuba | |
pushd cuba && ./configure && ./makesharedlib.sh && popd | |
export LD_LIBRARY_PATH=MultiNest/lib/:cuba/:${LD_LIBRARY_PATH} | |
'echo "backend: Agg" > matplotlibrc' | |
- name: Test imports | |
run: | | |
python -c 'import pymultinest' | |
python -c 'import pycuba' | |
rm -rf chains/ | |
- name: No-MPI tests | |
if: ${{ matrix.MPI == 'no' }} | |
run: | | |
coverage run setup.py test | |
python pymultinest_demo_minimal.py | |
python pymultinest_demo.py | |
- name: MPI tests | |
if: ${{ matrix.MPI != 'no' }} | |
run: | | |
python -c 'import mpi4py' && | |
mpiexec -np 4 python pymultinest_demo_minimal.py; | |
python -c 'import mpi4py' && | |
mpiexec -np 4 python pymultinest_demo.py; | |
- name: Long filename test | |
run: | | |
python tests/pymultinest_long_name_test.py; | |
- name: Marginal scripts test | |
run: | | |
python multinest_marginals.py chains/3- | |
python multinest_marginals_fancy.py chains/3- | |
python multinest_marginals_corner.py chains/3- | |
- name: Test PyCuba | |
run: | | |
python pycuba_demo.py | |
- name: Coveralls Finished | |
uses: coverallsapp/github-action@master | |
with: | |
github-token: ${{ secrets.github_token }} | |
parallel-finished: true |