Test #80
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name: Test | |
on: | |
push: | |
pull_request: | |
schedule: | |
- cron: '42 4 5,20 * *' | |
jobs: | |
Test: | |
runs-on: ubuntu-latest | |
timeout-minutes: 20 | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [3.8, 3.9, '3.10', 3.11, 3] | |
MPI: ['mpich', 'openmpi', 'no'] | |
defaults: | |
run: | |
# this is needed, because otherwise conda env is not available | |
shell: bash -leo pipefail {0} {0} | |
steps: | |
- name: Install build dependencies | |
run: | | |
sudo apt-get update && sudo apt-get -y --no-install-recommends install -y -qq libblas{3,-dev} liblapack{3,-dev} libatlas-base-dev cmake build-essential git gfortran | |
- name: Install openmpi | |
if: ${{ matrix.MPI == 'openmpi' }} | |
run: | | |
sudo apt-get install -qq openmpi-bin libopenmpi-dev python3-mpi4py | |
update-alternatives --list mpi|grep "${{ matrix.MPI }}" | xargs -rt sudo update-alternatives --set mpi | |
update-alternatives --list mpirun|grep "${{ matrix.MPI }}" | xargs -rt sudo update-alternatives --set mpirun | |
- name: Install mpich | |
if: ${{ matrix.MPI == 'mpich' }} | |
run: | | |
sudo apt-get install -qq mpich libmpich-dev python3-mpi4py | |
update-alternatives --list mpi|grep "${{ matrix.MPI }}" | xargs -rt sudo update-alternatives --set mpi | |
update-alternatives --list mpirun|grep "${{ matrix.MPI }}" | xargs -rt sudo update-alternatives --set mpirun | |
- uses: actions/checkout@v2 | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: test | |
cache-environment: false | |
cache-downloads: true | |
- name: Install python dependencies | |
run: | | |
micromamba install -c conda-forge --file conda-requirements.txt python=${{ matrix.python-version }} corner coveralls pytest toml | |
pip install git+https://github.com/JohannesBuchner/coverage-lcov@feature-coverage7 | |
#sed --in-place -e 's,"report_include",,g' -e 's,"report_omit",,g' /usr/share/miniconda/envs/*/lib/python*/site-packages/coverage_lcov/converter.py | |
conda list | |
conda info -a | |
- name: install mpi4py | |
if: ${{ matrix.MPI != 'no' }} | |
run: | | |
pip install --user mpi4py | |
python -c 'import mpi4py' | |
- name: Install MultiNest | |
run: | | |
git clone https://github.com/JohannesBuchner/MultiNest | |
mkdir -p MultiNest/build; pushd MultiNest/build; cmake .. && make && popd | |
test -e MultiNest/lib/libmultinest.so | |
echo LD_LIBRARY_PATH=MultiNest/lib/:${LD_LIBRARY_PATH} >> $GITHUB_ENV | |
echo RDMAV_FORK_SAFE=1 >> $GITHUB_ENV | |
- name: Install PyMultiNest | |
run: | | |
python -m pip install . | |
- name: Test imports | |
run: | | |
python -c 'import pymultinest' | |
rm -rf chains/ | |
- name: No-MPI tests | |
if: ${{ matrix.MPI == 'no' }} | |
run: | | |
# do not test pycuba, it is broken | |
rm tests/pycuba_test.py | |
coverage run -m pytest | |
coverage report | |
coverage-lcov | |
python pymultinest_demo_minimal.py | |
python pymultinest_demo.py | |
- name: MPI tests | |
if: ${{ matrix.MPI == 'openmpi' }} | |
run: | | |
mpiexec -np 4 --oversubscribe python pymultinest_demo_minimal.py | |
mpiexec -np 4 --oversubscribe python pymultinest_demo.py | |
- name: MPI tests | |
if: ${{ matrix.MPI == 'mpich' }} | |
run: | | |
mpiexec -np 4 python pymultinest_demo_minimal.py | |
mpiexec -np 4 python pymultinest_demo.py | |
- name: Long filename test | |
run: | | |
python tests/pymultinest_long_name_test.py; | |
- name: Marginal scripts test | |
run: | | |
python multinest_marginals.py chains/3- | |
python multinest_marginals_corner.py chains/3- | |
- name: Coveralls Finished | |
uses: coverallsapp/github-action@master | |
if: ${{ matrix.MPI == 'no' }} | |
with: | |
path-to-lcov: lcov.info | |
github-token: ${{ secrets.github_token }} | |
flag-name: MPI-${{ matrix.MPI }} | |
CondaTest: | |
runs-on: ubuntu-latest | |
timeout-minutes: 20 | |
defaults: | |
run: | |
# this is needed, because otherwise conda env is not available | |
shell: bash -leo pipefail {0} {0} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
cache-environment: false | |
cache-downloads: true | |
environment-name: test | |
environment-file: conda-requirements.txt | |
- name: Install dependencies | |
run: micromamba install -c conda-forge --quiet multinest | |
- name: Test imports | |
run: | | |
python -m pip install . | |
python -c 'import pymultinest' | |
- name: Tests | |
run: | | |
python pymultinest_demo_minimal.py |